barSeed - Barley Seed Development Database

Probe CUST_30395_PI390587928

Source Contig U35_19678

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30395_PI390587928	Hv_44K_v2	CTACGTACAGATGTAACATATCATACTTCTGCAGTAGTTTCTAGTTCTTTCTCTTGTGTA	727	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22184.1	6194	2e-24	3423 - 3482	100	60 / 60	minus	ABC12425 ABC15227 ABC33324 ABC38132
JLOC1	JLOC1_15379.3	4358	8e-25	2594 - 2653	100	60 / 60	plus
JLOC1	JLOC1_15379.2	3871	8e-25	2107 - 2166	100	60 / 60	plus
JLOC1	JLOC1_15379.1	3850	8e-25	2086 - 2145	100	60 / 60	plus
Harvest35	U35_19678	803	3e-25	728 - 787	100	60 / 60	plus

Contig Sequence (803 bp)

>U35_19678 803 Hv_44K_v2
GGGACGACTAGTATCTGTCTAGAAGAGTACAGACTTGACAGAAAACAAAAAGAGGAGGAA
AAAAGGCGATACCGGGATCAGAAGAAATTGGAGAGCATCCTGCTTGCAGAGAAAGAAGCG
ATTTTTGGCTCCAAACCAAGCCCAAAGAGAACGAGCAACTTAACCAGAAAGACAAACGGG
TACCGTTCAAATGGGAACAGTAATGGACTAATGACCCCAACACCTCGTCGGTCATCCCTA
GGCAGTGCCACCCCTGAGCTTTCGACACCCAAATCATATTCCAGTCGCTATAATAGATAC
TTTGGAGATTCAAGGCGGCTATCTGTATCACAATTGAACTTCGGCGATGATTCACTATCA
ACATTTACATCAATTAGTGGTTCTGAACCAGAATCCCCTTCTATGGGATAATCTCCTGGT
CAATCTATTGGGTCGATTGCCAAGTAATTAGCATTGTAAATGGACCAGTGTGCTATGAGG
TTTTTGCATTTGTGTGTACATTGCTGATGCCATGTATTTAGCTATAGCTAGTATTGTTGA
CTAGTGAGCACTGGGTTGGTTGACTTTGTTTCAGGTTTGAAATTAATGTTTTGAGTTGAT
GGCTCTATTAGATGATTAGGTGAAAGATGTAGCGAGTGGTTTAGGGGCAATCATTTGTAC
CATATCAAATGTCATAATTTATGTGACTGGCTTTGTGTGTTGCAACCATGCAGAAACAGT
TTGAAATCTACGTACAGATGTAACATATCATACTTCTGCAGTAGTTTCTAGTTCTTTCTC
TTGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19678 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None