barSeed - Barley Seed Development Database

Probe CUST_30350_PI390587928

Source Contig U35_19694

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30350_PI390587928	Hv_44K_v2	ATGTGCCATGATGTGCTTAAATGAACGGAACTACTTATCATAATGTTCTTTCGTTGGAAT	1126	GeneList: green MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.132	1.252	1.286	1.133	0.500	0.468
Raw	1035.096	1827.054	1586.773	2162.396	341.691	344.622

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77704.1	2963	2e-24	23 - 82	100	60 / 60	minus	ABC13958
MLOC	MLOC_77704.2	1262	2e-24	5 - 64	100	60 / 60	minus	ABC13958
MLOC	MLOC_77704.3	3387	3e-22	1 - 56	100	56 / 56	minus	ABC13958
JLOC1	JLOC1_51809.8	2867	8e-25	2805 - 2864	100	60 / 60	plus
JLOC1	JLOC1_51809.7	1239	8e-25	1177 - 1236	100	60 / 60	plus
JLOC1	JLOC1_51809.6	1158	8e-25	1096 - 1155	100	60 / 60	plus
JLOC1	JLOC1_51809.5	2943	8e-25	2881 - 2940	100	60 / 60	plus
JLOC1	JLOC1_51809.4	3388	8e-25	3326 - 3385	100	60 / 60	plus
JLOC1	JLOC1_51809.3	1131	8e-25	1069 - 1128	100	60 / 60	plus
JLOC1	JLOC1_51809.2	1167	8e-25	1105 - 1164	100	60 / 60	plus
JLOC1	JLOC1_51809.1	2091	8e-25	2029 - 2088	100	60 / 60	plus
Harvest21	ABC13958	1208	1e-23	1127 - 1186	98	59 / 60	plus	ABC13958
Harvest35	U35_19694	1208	3e-25	1127 - 1186	100	60 / 60	plus

Contig Sequence (1208 bp)

>U35_19694 1208 Hv_44K_v2
CCCGCATCTTCTCTCTGCGCTCCCACGCCCTAGGGTTAGCCGCCGCCTCCGACGACCTTA
TTCCGACGAGCTTCGACAGCCATGGCCTGCGCGCAGCATCCTGCGAAGCTCACCTAGTAC
CGCTCCGTTGATCCCTCCATCCATATCCGCCCCTCCCTACCTCCAACGCTCGCGCTCAAC
CATCCCCCGCGGCTAGGTTTCGGGGCGCGACCTAGTCTCCACCACCGACATTTCATTGCG
GAGCCTCACAGATCTTAGAGAGCCCAACACCCACCCTCCACCAACTCCTAGGTTTTCTCC
ATCGACGCTGCCGCCGCCACCCGCCTGATCTTCGGCCACCGGAGTCCCTCCTCTCCTCTG
GCCGGTGGTTTGAGATCCGCCTCGCCCGTGAAGCACTCCGTCCAGATCTCCCCCTCCCAC
CTCCGAGTGCGTGGAAATCTTCCACCGATTTGCATCTCCCATCATGAACTAGATGTCGTC
CGAGCTGCCTCTCCTGCAGCTTGGCGCGGCTTCTCCACGGATGCTACTAGTTACCCCTAC
TGCCACCGGACCTGCATGTTCAACAAAGACCAGCCGCTGCTTCTCCCTCCACCGTGCACA
TCTTCGCCATCATCGCCGCCGTCCTACTTTTATTCCCCTCCTGAATCGAGGGAGCAAGAG
AGATGAGGCGCTGATCCTGGAGGAGGTGTCTAAATACAACTCCAAGGATGGCTGCTGGCT
CATCATTGTTGGCAAGCGCTGGGTGGTGGCGTCCTTCCATCATCACCTGCCCCTTGGCAA
CTCATTTTATTTATGTACCAAGTACACCAACTTCAACTACTCCAGCCTCCATGTGCAGGC
ATGTAAACCACAACCTTCTGGTCTGTATGTTCTTCTCATTTGTGATCCTTTTAACGCGAG
GAAGTTCCTCAATCCAGAATTGGCTACTCAGAAGAAGTGGAAAGTGGAAGACAGACGATG
CTATGGTTTCTCAATTTGCTGTTACATGTGAACAATTTAATTTTATGTTCTTTAATGTGT
TCCATTGAAGCCACAGTGGTTGTATTGGTCATATAGTACCAACACTTGTTGGATTTGTAG
TGGAGTTGAAGGTTGAATTATTTTATGTGATGCATGTTTGTAAAGTATGTGCCATGATGT
GCTTAAATGAACGGAACTACTTATCATAATGTTCTTTCGTTGGAATTATCTAAAAAAAAA
AAAAAAAA

Homology of Contig U35_19694 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None