barSeed - Barley Seed Development Database

Probe CUST_30316_PI390587928

Source Contig U35_23014

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30316_PI390587928	Hv_44K_v2	TTTTCAGTTTGGGGTTGTTTGTTCCTGGTTTTTAACGGATTGTGGGTTTCATTGTTTTCT	728	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355234	3630	2e-24	1943 - 2002	100	60 / 60	minus	ABC05214 ABC10333 ABC16382
MLOC	MLOC_28529.1	273	2e-24	133 - 192	100	60 / 60	plus	None
JLOC1	JLOC1_19130.1	259	8e-25	143 - 202	100	60 / 60	plus
Harvest21	ABC24688	608	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_23014	788	3e-25	729 - 788	100	60 / 60	plus

Contig Sequence (788 bp)

>U35_23014 788 Hv_44K_v2
CAAAGGAATTGATGTGCAGTGTCAGGCCCCGCTATACGTGGACACGAAGATGGTTATGAG
CATGGTAACGTGGGGAGGCTCTGTGTCACAGGTGATCATGCCAACACCAGACGCGTACGC
CAGTGCGGGGGCAAGCTGGATCGGGCACTGCCGCCCGGTCTGCCTGCCCAACTTGGGCCA
CCGACTGCAGATGTGCTTCTACCAATTTGTGCCCGCTCGCATCCTCGTCGCGCTTTGCTT
CCGTGAGACGCTTCAGCAGCGGGCCCTGCAGCTACTAACACCGTCAACAAGGGGACCATC
GCATGGGGTCAATGGTGGCCTGACCCCCCACCAAATTCAACTAGTTGGCCTGCATCATTT
GTTTGTGTGCGTGCCTGAAATAATCTATTATATATGGTCTTACAAGAATTGTAAGAANAN
ACATATATATATATATATATATATATATATATATATATATATATATATATATATGTGAGT
ATGACTAGTACAAATGCCCGTGCGTTGCACCGGGCTAGAAAAAAATGCAGAACCTACTTG
TTTTGCCATGCGGCATTAGTTTTAATAAATGTTAATTATAATGTTAAATATAAGGCATCT
ATTTTTGGACGGAAGGAGTTTCTTTTAAAGTTTTAAAATATAATGTAATGCTTACATAAA
AATTGGATTACTTTTTAATAATAATCTGGAGTCGCGCATCTCAGCAAGCGATTCTGAAAG
CATCTGTCTTTTCAGTTTGGGGTTGTTTGTTCCTGGTTTTTAACGGATTGTGGGTTTCAT
TGTTTTCT

Homology of Contig U35_23014 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None