barSeed - Barley Seed Development Database

Probe CUST_30311_PI390587928

Source Contig U35_23019

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30311_PI390587928	Hv_44K_v2	TCGACAAGGAGTGGGACTGGGACAACTTCCTGATACTGCAGATACTGATGGCGTCCACGG	431	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70751.1	2360	2e-24	1838 - 1897	100	60 / 60	minus	ABC04823 ABC26033
MLOC	MLOC_70751.2	2337	2e-24	1711 - 1770	100	60 / 60	minus	ABC04823 ABC26033
MLOC	MLOC_70751.3	2215	2e-24	1705 - 1764	100	60 / 60	minus	ABC04823 ABC26033
MLOC	MLOC_70751.4	1961	2e-24	1451 - 1510	100	60 / 60	minus	ABC04823 ABC26033
JLOC1	JLOC1_46967.1	2405	8e-25	520 - 579	100	60 / 60	plus
Harvest35	U35_23019	1032	3e-25	432 - 491	100	60 / 60	plus

Contig Sequence (1032 bp)

>U35_23019 1032 Hv_44K_v2
TGCAGCCTGCGGGGAAACCGTACCGTGCTCCCTTCATCCCGGCGTCACGCCTCCCGCCCG
CAGCTTCGTTTCTCGGATCAAAGGCCGTGCATGCAACAGTAACCCGGCCGGGTCTACGTG
CACTGCCGGAGGGGACGCACGGAAGGCGGCGAGAAGGAGCTAGCGCGCGCGCGCCATGGG
TGCCGCGTTCTTGTCTTCATGGCCGTGGGATAACCTTGGCTTCTTCAAGTATGTCTTGTA
CGGGCCTCTGGTGGGCAAGGCGTTGGCGTCCCGGGCGTGGGAGCCGGCGAGCCCCGACCA
CTGGCTCTGCCTCCTGCTGGCGCTCTTCGCGCTCCGGGCCTTCACCTACCAGCTCTGGAG
CTCCTACAGCAACATGCTCTTCCTCACCCGCCGCCGCCGCATCGTCCGCGACGGCGTCGA
CTTCGAGCAGATCGACAAGGAGTGGGACTGGGACAACTTCCTGATACTGCAGATACTGAT
GGCGTCCACGGCGCTCTACGCCTTCCCGTCGCTGCGGCACCTCCCGGGGTGGAACACCGC
CGGCTTCGCCGTCGCCGCCGTCCTCCACGTCGCCGCCACCGAGCCCTTGTTCTACGTGGC
GCACAGGGCCTTCCACGGCGACCACCTCTTCGCCCGCTACCACGCGCCCCACCACTCCAT
CAAGGTGCCCACGCCCTTCACAGCCGGGTTCGCGACGCCGCTGGAGCACATGGTGCTGGG
CGCGCTCATGGCGCTGCCGCTCGCCGGCGCGTACGCCGCGGGTGTGGGCTCGGTGGGGCT
GGCCTTCGCCTACGTGCTGGCGTTCGACTTCCTCAGGGCCATGGGCCACTGCAACGTGGA
GCTGTTCCCCGGCGGCCTCTTCCGGTCGCTCCCGTTCCTCAGATACCTCATCTACACCCC
AACGTACCACACCATCCACCACGCCGGGAAGAAGGCCAACTTCTGCCTCTTCATGCCGCT
GTTCGACCGGCTGGGCGGCACGCTCGACGCCACCTNCTGGGAGCTGCAGAGGAAGAACAG
AGCAGGGATGGA

Homology of Contig U35_23019 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25850.1	620	3e-137	protein\|WAX2, putative, expressed
Brachypodium v1_2	Bradi4g30750.1	620	5e-147
Arabidopsis v10	AT5G57800.1	632	5e-79	\| Symbols: FLP1, YRE, CER3, WAX2 \| Fatty acid hydroxylase superfamily \| chr5:23420589-23423832 FORWARD LENGTH=632