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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30279_PI390587928Hv_44K_v2CACATGAATAAGTAGTATCCATGAATGCAGGTTCATTGTTCCAAACACTTCTGCTCTGAT178GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3021.3811.1050.8740.4490.368
Raw 82.408138.24895.319125.10121.72118.953



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_77890.109763e-21638 - 6979758 / 60plus ABC35010
MLOCMLOC_77890.514803e-21640 - 6999758 / 60plus ABC35010
MLOCMLOC_77890.614823e-21640 - 6999758 / 60plus ABC35010
MLOCMLOC_77890.118453e-21512 - 5719758 / 60plus ABC35010
MLOCMLOC_77890.38763e-21557 - 6169758 / 60plus ABC35010
MLOCMLOC_77890.415343e-21557 - 6169758 / 60plus ABC35010
MLOCMLOC_77890.213663e-21561 - 6209758 / 60plus ABC35010
MLOCMLOC_77890.114803e-21641 - 7009758 / 60plus ABC35010
MLOCMLOC_77890.813843e-21555 - 6149758 / 60plus ABC35010
MLOCMLOC_77890.913893e-21555 - 6149758 / 60plus ABC35010
MLOCMLOC_77890.715293e-21555 - 6149758 / 60plus ABC35010
JLOC1JLOC1_51916.720952e-21569 - 6289758 / 60plus
JLOC1JLOC1_51916.619202e-21577 - 6369758 / 60plus
JLOC1JLOC1_51916.524472e-21602 - 6619758 / 60plus
JLOC1JLOC1_51916.424482e-21606 - 6659758 / 60plus
JLOC1JLOC1_51916.319462e-21608 - 6679758 / 60plus
JLOC1JLOC1_51916.224492e-21609 - 6689758 / 60plus
JLOC1JLOC1_51916.124482e-21611 - 6709758 / 60plus
Harvest21ABC350105423e-25179 - 23810060 / 60minusABC35010
Harvest35U35_389955423e-25179 - 23810060 / 60minus



Contig Sequence (542 bp)

>U35_38995 542 Hv_44K_v2
CCTTTTTTTTTTTTTTTCTTTTCCTTTTTGTGTGTGCTTCCATGTTACATCGTGTGAAAG
TGAACGGGATTGGCCCGATTGGCTATTCAGCGCCGCAGTTCCTGGTTGATGAGTCAACTA
GTCTAAGGTGAAGAAGAGTTTGGTTCACTGCAGCTTACAGATCAAGAATAATTCTGGCAT
CAGAGCAGAAGTGTTTGGAACAATGAACCTGCATTCATGGATACTACTTATTCATGTGGC
TGTTGCAGTGGCAGAAGACTGCTTGAACCAAACAAAGCTTGGGCCAACACTTCTCTTCCT
AGGAGATTTATCTGTATTAACCCCACTATACCACAGTGCAGGGTGCTGAGTTCAATAAAC
CATCACAAAGCAAAGCTATACCTTCAGACATGCCCCTGTATTTCTCCCACTCTAAATTTT
CAATCCAGCACAAAAGGGGAGCTATACCTTCAGACCTGCCCTTGTACTCCTCCCTCTCAT
ATTTATGTAGGAGATACCACCCAAGGCCATGGCATCCGAACTGCTCGTGTATGCAAAAAA
CT



Homology of Contig U35_38995 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None