barSeed - Barley Seed Development Database

Probe CUST_3007_PI390587928

Source Contig U35_6292

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3007_PI390587928	Hv_44K_v2	GACGTTACCAAATATTTTGAGTTGTGTTTGTGTATGCTTGATGATGTGCATGAATGACAT	1035	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356528	2129	2e-24	2047 - 2106	100	60 / 60	plus	ABC13525
MLOC	MLOC_11507.1	1388	3e-22	1 - 56	100	56 / 56	minus	ABC13525
JLOC1	JLOC1_7625.2	1674	8e-25	1516 - 1575	100	60 / 60	plus
JLOC1	JLOC1_7625.1	1621	8e-25	1463 - 1522	100	60 / 60	plus
Harvest21	ABC13525	1126	3e-25	1036 - 1095	100	60 / 60	plus	ABC13525
Harvest35	U35_6292	1126	3e-25	1036 - 1095	100	60 / 60	plus

Contig Sequence (1126 bp)

>U35_6292 1126 Hv_44K_v2
TGAAGGATGCTGCTTTGTCGGATGACAAGTTGCGTGAAACCTACTTTGAGATTGTTACAA
CGATGCGGACACTTTACCAAAAGTGCAAGCTTGTCCATGGTGATTTGAGTGAATACAACA
TTCTTTATTATGAGGGACACTTGTACATCATTGATGTTTCACAGTCTGTCGATCTTGACC
ATCCTTCAGCTTTGGATTTCCTGAAGGAAGATTGCTTGCATGTTAATGATTTCTTTGAAA
AACGAGGCATTGCTGTCATGACAGTAACAGAGCTATTTAATTTCGTTGTGGACCAAAATA
TCGCCGATGAAGATGTTGATGATTACCTGGAGAAGATTCAGCAAAAGATTTTGGAAAATG
AAGATACAGCTGCAGATGATGATGAAATTGCTCCGACAGTCTTGGTGCAGACGTTGGATT
ACGTGAAGCAATGTGAGGCAGACATTGTCAGCATGTCAATGATGCAACGCCCATCCGTTG
GTTACGAGCCAACAGCAGATAAGCTTTATGACCAGCCACTGTTAGGATTTGTGCGGGCTA
AAAACGAGCCTACCGAAAACCAGGAAGCACGACCGTCCCAAAATGTACTGGAAGAACCCT
TGGACCTGCAAACCAAGTGCTCCTTGGAGAACAATGAGGAAGATGAACCGGGTGACAGCG
AGTCCTGCTCTAGTTCTGATGAAGACGGTTCGTGGCACGAGTCCACAAAGTTGGGGCCCG
AGGAAAGGAAGGCTGCTCGCAAGGAAAACAAGAAGAAAGTGAAGGAAGAGAAGAGGGAAA
CTCGCAAGAAGAAGATCCCCAAGGCTGATAAGAAGAAGAGGAAGAAAATGGCGAAAGCCA
AGTGCAAGCGGTAGTGGATCACTGCTGGTTGGCAATCCACATGGTTGACACCATCAATTT
TGTTATACAAATCTAGTTCCAGTCAGTCTTGTCTCCAATGGAGATGAGTGATGTGTTGGA
TGCGCTTTGTTTTCTATTGTAGTCCTATAAACGTATTGCTTGAAAACCAATGTCGTAAAA
GATCCGTCCCGCGGCGACGTTACCAAATATTTTGAGTTGTGTTTGTGTATGCTTGATGAT
GTGCATGAATGACATATCTTAATTTCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6292 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g06820.2	525	5e-118	protein\|serine/threonine-protein kinase RIO-like, putative, expressed
Brachypodium v1_2	Bradi3g41230.1	588	1e-125
Arabidopsis v10	AT5G37350.1	531	1e-59	Serine/threonine-protein kinase Rio1 \| chr5:14793037-14795828 FORWARD LENGTH=531