barSeed - Barley Seed Development Database

Probe CUST_30049_PI390587928

Source Contig U35_16946

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30049_PI390587928	Hv_44K_v2	GCAAAATAGGGTTAACCTCCTTGTTTTGTTGGTTAATAAGCTTATAACCTCCTAAAGTAC	372	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71382.1	1559	2e-24	119 - 178	100	60 / 60	minus	ABC08212 ABC08213 ABC15809 ABC31282
MLOC	MLOC_71382.2	1639	2e-24	30 - 89	100	60 / 60	minus	ABC08212 ABC08213 ABC15809 ABC31282
JLOC1	JLOC1_47441.2	1689	8e-25	1494 - 1553	100	60 / 60	plus
JLOC1	JLOC1_47441.1	1518	8e-25	1323 - 1382	100	60 / 60	plus
Harvest21	ABC15809	545	3e-25	373 - 432	100	60 / 60	plus	ABC15809
Harvest21	ABC08213	1101	6e-22	898 - 957	97	58 / 60	plus	ABC08213
Harvest35	U35_16946	545	3e-25	373 - 432	100	60 / 60	plus
Harvest35	U35_16947	1095	1e-23	898 - 957	98	59 / 60	plus

Contig Sequence (545 bp)

>U35_16946 545 Hv_44K_v2
GACGGAGAACTCCGGCGCCTGGGTTTCCAGGAGAACTGTAGAAGTGATCAACGGCGACAT
GGCGTCGGCGGCAGGCGACGGGACGAGGAGGAGGAAGACGGCGTGCGTCACCGGAGGGAG
CGGGTACATCGCGTCGGCGCTCGTCAAGATGCTGCTGGAGAAGGGCTACGCTGTCAAGAC
CACCGTCAGAAATCCCGATGACACGGAGAAGAGTCTGCATTTCGTCGGCGAAGCTCGTCG
GGGAAGGGTTTGAGTTCAGGTACAAGAACCTGGACCAGATATACGACGACGTCGTCGAGT
ACGGGAGGGGGTTGGGAATCCTTCCGTACTAGTATGATTGATTGATCTTTGAACCAAACG
ATGCGCTTGCAAGCAAAATAGGGTTAACCTCCTTGTTTTGTTGGTTAATAAGCTTATAAC
CTCCTAAAGTACATATATGATGAAATGTGGTTGTTTAGCTCATATGAAAAATGATTTGTA
AAACATACTTGTATGAAAAGTGGTATATACCATTGTGAACATTCTCGGAAAAAAAAAAAA
AAAAA

Homology of Contig U35_16946 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None