barSeed - Barley Seed Development Database

Probe CUST_30048_PI390587928

Source Contig U35_16947

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30048_PI390587928	Hv_44K_v2	TGTATGAAAAGTGGTATATACCATTGTGAACATTCTCGGAACAATGGTTGTGATCTGCGG	1014	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71382.1	1559	2e-23	4 - 61	100	58 / 58	minus	ABC08212 ABC08213 ABC15809 ABC31282
JLOC1	JLOC1_47441.2	1689	1e-23	1611 - 1668	100	58 / 58	plus
JLOC1	JLOC1_47441.1	1518	1e-23	1440 - 1497	100	58 / 58	plus
Harvest21	ABC08213	1101	1e-23	1015 - 1071	100	57 / 57	plus	ABC08213
Harvest35	U35_16947	1095	3e-25	1015 - 1074	100	60 / 60	plus

Contig Sequence (1095 bp)

>U35_16947 1095 Hv_44K_v2
GGGCGCTCGGCCCCCTGGAGGTCTTTCGCGCCGACCTCGACGAGGAGGGCAGCTTCGACG
GCGCCGTCGCCGGCTGCGACTACGCCTTCCTCGTCGCCGCTCCGGTGAACCTCTACGCAG
AGAACCCTGAGAAAGACGTGATCGAGCCGGCCATCCACGGAACCCTCAACGTGATGAGGT
CGTGCGTGAGAGCGGGCACGGTGAAGCGCGTGGTCCTGACATCGTCGGCGGCCGCCGTCT
CCAGCCGGCCGCTGCAAGGGGACGGCCATGTCCTGGACGAGGAGTCCTGGTCCGACGTCG
AGTTCCTCAGATCGAGAAAGACCGGTCCCTGGGCGTACCCTGTCTCCAAGGTGCTTCTGG
AGAAGGCGGCGTGCGCGTTCGCCCTGGAGCACGGCATCAGCCTGGTCACCGTGTGCCCCG
TCGTCACCGTCGGCGCGGCGCCGGCGGCCAAGGCCAACACCAGCGTGCCCGACATCCTCT
CCCTGCTCTCCGGCGATGATGCGAGGGTGAGGAAACTTGAATTCATCGAGAGGAGGACCG
GCTCGATCCCGATGGTCCACATCGACGACCTCTGCCGCGCCGAGGTGTTCGTCGCCGAGG
AGGAGGCCGCGTCGGGGCGGTACAACTGCGGCAGCGTCAACACCACCGTCGTGGAGCTCG
CCCGCTTCCTGGCGGCCAAGTACCCGCAGTACAACGTCAAGACCGACCGGTTCGCCGGTC
TCACCGGGAAGCCGAGAGTCTGCATTTCGTCGGCGAAGCTCGTCGGGGAAGGGTTTGAGT
TCAGGTACAAGAACCTGGACCAGATATACGACGACGTCGTCGAGTACGGGAGGGGGTTGG
GAATCCTTCCGTACTAGTATGATTGATTGATCTTTGAATCAAACGATGCGCTTGCAAGCA
AAATAGGGTTAACCTCCTTGTTTTGCTGGTTAATAAGCTTATAACCTCCTAAAGTACATA
TATGATGAAATGTGGTTGTTTAGCTCATATGAAGAATGATTTGTAAAACATACTTGTATG
AAAAGTGGTATATACCATTGTGAACATTCTCGGAACAATGGTTGTGATCTGCGGAAAAAA
AAAAAAAAAAAAAAA

Homology of Contig U35_16947 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53850.1	345	6e-121	protein\|leucoanthocyanidin reductase, putative, expressed
Brachypodium v1_2	Bradi5g22800.1	345	5e-141
Arabidopsis v10	AT1G61720.1	340	1e-70	\| Symbols: BAN \| NAD(P)-binding Rossmann-fold superfamily protein \| chr1:22791326-22792757 REVERSE LENGTH=340