barSeed - Barley Seed Development Database

Probe CUST_29946_PI390587928

Source Contig U35_6674

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29946_PI390587928	Hv_44K_v2	GGCTCGTAAGACCCTGTCCAGTTTGTTACAAATTATCTATTTATGTACGTCATTATTGTT	806	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.034	1.981	1.159	0.606	0.236	0.201
Raw	148.765	219.165	113.490	91.018	13.314	11.469

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251184.1	2820	2e-24	2734 - 2793	100	60 / 60	plus	ABC13702
MLOC	MLOC_31604.1	364	2e-24	156 - 215	100	60 / 60	minus	ABC13702
MLOC	MLOC_28030.1	1141	3e-21	17 - 76	97	58 / 60	minus	ABC13702
JLOC1	JLOC1_20734.1	363	8e-25	155 - 214	100	60 / 60	minus
Harvest21	ABC13702	891	3e-25	807 - 866	100	60 / 60	plus	ABC13702
Harvest35	U35_6674	891	3e-25	807 - 866	100	60 / 60	plus

Contig Sequence (891 bp)

>U35_6674 891 Hv_44K_v2
CAACAAAGCACAGAAAAAGAATAAATGGGATAAACTAAAAAGTGCTTACTACATTATGGA
AGAGTTTGAAAAAGGAGACAGATATGGGCTGGGATCCTGTGAAGCAAACAGTTACAGCTT
CAGCCGAGCGTTGGAAAAATCTTAAGAAAAAATACCAAGGTTGTGGTAGGTTTCAAAAGG
CTGGACTTCAAAATGAGGACCTTTTGGCCAAGATCTTTGAAGACTTGCGCAACACTGCTG
AAGACCATTGGCCTCCTGCTAATGGTAGCATGCCTCAAAGTCCTCAGAATGTTGATGCTG
AAGACCACGGAGATGAGAACGAGGACAAAGAAAGTGAGGAGGAAGATGAGTCTCCAGTTA
TTAATAATAAAGGAAAAAGTGTTGGTGGTGCTATAGAAGGAAAAGGAAAAAAATCAAAAA
GTGATTCTGCGATCATGCAATACCATTTGAAAGAAACTGTTGAGCTGAGCAAGAAGTCGC
AAGCAGCCATTGAATCCATTGCTAAACAACGAGAGGATGCCTCAGTTTGTACCATCAAAG
ATGCGATGACTCTGGTTACAGAATGTGGTGCTGTCATCGGCACTAATGAGCACTTCATTG
CTTCTGAGATTTTCGTAAAGAAGGAGCAAAGAGAAATGTTTATGACCATACTTGATGCTA
GTGCACGCTTTGACTGGCTTCAAAGGAAATATGATGCCAAGTATGGCAAATAGATTATAA
TATTTTGGTTGTAATTGTTAAGGCATTCCTATAAGTAGTATGCCTTCAACACTCCTATCT
TTCATGTTGCATTTAGTTATTTATTTGGCTCGTAAGACCCTGTCCAGTTTGTTACAAATT
ATCTATTTATGTACGTCATTATTGTTATTGACTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6674 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g35190.1	298	1e-56	protein\|transposon protein, putative, CACTA, En/Spm sub-class, expressed
Brachypodium v1_2	None
Arabidopsis v10	None