barSeed - Barley Seed Development Database

Probe CUST_29924_PI390587928

Source Contig U35_20368

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29924_PI390587928	Hv_44K_v2	GATAAACAATTCATTGTAGTATATAAGCGTCAAGGCTCGATTCAGAGTTCTCCTTGTTAA	1234	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.448	2.008	1.488	1.005	0.279	0.301
Raw	57.061	125.016	78.489	80.032	7.656	9.438

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68256.2	3125	6e-24	1418 - 1476	100	59 / 59	minus	ABC14246
JLOC1	JLOC1_45138.5	2311	3e-24	2177 - 2235	100	59 / 59	plus
JLOC1	JLOC1_45138.4	2233	3e-24	2099 - 2157	100	59 / 59	plus
JLOC1	JLOC1_45138.3	2137	3e-24	2003 - 2061	100	59 / 59	plus
JLOC1	JLOC1_45138.2	2034	3e-24	1900 - 1958	100	59 / 59	plus
JLOC1	JLOC1_45138.1	1996	3e-24	1862 - 1920	100	59 / 59	plus
Harvest21	ABC14246	1309	3e-25	16 - 75	100	60 / 60	minus	ABC14246
Harvest35	U35_20368	1309	3e-25	1235 - 1294	100	60 / 60	plus

Contig Sequence (1309 bp)

>U35_20368 1309 Hv_44K_v2
GAAAAAACGAAGAAAAGCAGCAAAGGAGTCACTCGATTCCTTGCTAAAACAGGAATGTGT
TGATAACTCAAATCCCAGATATTCAAATGGAGATTCTCGTGATAGTGGGATCTACGCAAG
AAATAGCAGTGGTGATTGTGTTCTTCGGCTTGGTGCTGACTGTGCATCCGAGAACTTAAC
ACTGTTAGAAACTGGAGAGTCTGTATATTGTCCAATTCTGCAGGAAGGACCCATTATGAC
AGCAGAGCTCATAAAAGAAACAGAGGAACTTGTCTTACGGACAGGAAGTGTTGGTGCTGG
CTGTTCTCAGCTTTTATCAGATATGCAGGCGTTCAAGGCTGCAAACCCGGGATGTGTCCT
TGAAGATTTCATTAGGTGGCACTCCCCACCTGACTGGTCTGAAGATTTTGCAGCAAGCAA
TGCAACCGTAGGAGAGGGCTCATCTAGACGTGGCCGGCTAAGTGACAGAATGCAAACAAA
AGAAGGAAATTTGTGGAAGGAATTGTGGGAAGCAGCAAAACCTATACCTGCTGTTGAACA
AACTCCGCTATATGATGAAGATTTAGCTGTGGAGAGCATATTTGATGCCTTGGAGGTTAT
TGAACCAGCAAAACTGTTTCAGCAGCTACTCTCAGTCATTCTTTCTGTATGCTTCGTAGC
AGCTGAATCAGTGCTACCAGCAGACAGTAATCTGTCAAAATTATTCTACGATTGTAAAGA
CTACATCATTGGCATTTACCAAGATGACATGTCGAAAGAAAAGCTGGATGAGATCTGCAA
GGTTTATGAGACGATGGAAGCCATAGTAACCCATCCTGAAGACGCTCTTCAGATCACGGA
GCAACCTGACGAGAAGTCTGCCGAGATTAAAAACCGGTTCAAGCTCAAGCTGAACTTCAA
CGGCAAAGATGGTCAGTCTCTGTGGAAGCGTGCAGCAAAGGATGAGAAGAGAACATCCCC
AAATGACGAGAAAAAATCACCGGAAGAAAAGAACTCGAATTTTTTCTCGAACCTTCGCGA
GAGGAAGGCCGCCTTATTTTCAAAAAAGAATGCAAAAGCTTCAGAGTTGCCGTCGCCACC
CCCACCATCAGCGCTGGGCCCATTTGACGAGAGCGAATGGACGATTTTGTAGTTGAGGCT
CGAGGATGTTTCCTTTTGTACAACTTGTAAAGAAGGTGCCCCAAGCTGTAAATGCTCATC
CAATTCATTGAACACTTTGCAATAAACTTGAAAAGATAAACAATTCATTGTAGTATATAA
GCGTCAAGGCTCGATTCAGAGTTCTCCTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20368 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32670.1	667	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi1g26457.1	670	0.0
Arabidopsis v10	AT5G55060.1	662	7e-109	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). \| chr5:22342079-22346400 FORWARD LENGTH=662