barSeed - Barley Seed Development Database

Probe CUST_29893_PI390587928

Source Contig U35_32350

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29893_PI390587928	Hv_44K_v2	GAATTCATCATGCCCATCACCACTCTCTGGACATGGCGCCTCGCTCTCTCAGGAGCTTTG	435	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373337	4492	7e-23	455 - 515	98	60 / 61	plus	ABC13844 ABC17852 ABC21581 ABC41122 ABC44969
MLOC	MLOC_76567.3	7548	7e-23	1226 - 1286	98	60 / 61	plus	None
MLOC	MLOC_76567.5	1999	7e-23	466 - 526	98	60 / 61	plus	None
MLOC	MLOC_76567.2	8146	7e-23	1226 - 1286	98	60 / 61	plus	None
MLOC	MLOC_76567.1	3126	7e-23	1031 - 1091	98	60 / 61	plus	ABC21581
MLOC	MLOC_76567.4	3540	7e-23	955 - 1015	98	60 / 61	plus	ABC21581
JLOC1	JLOC1_51056.1	3496	4e-23	612 - 672	98	60 / 61	plus
Harvest35	U35_32350	498	3e-25	436 - 495	100	60 / 60	plus

Contig Sequence (498 bp)

>U35_32350 498 Hv_44K_v2
TCGAGCACTGTTGGCCTAGTGGTTTCGAGAGGGGGCGGGGGGAGAGACCAGAGACCAAGG
GAAGCTTCACCGAGGATGGCCGCCGTCCCTCCGCCGGAGACTGCGCTCTCCTCCGTGGCG
GACGGCTCGGATGACGAGGATGGGGACCAGTGCCGCATCTGCCGCTTCCCCGCCGAGGCG
GATCGCCCTCTGCGCCGCCCCTGCGCCTGCAGCGGCAGCATCAGGTTCGTCCACGACGAC
TGCCTCCTCCGATGGCTCGCCACCAGCCGCCAGTCCCGGTGCGAGGTGTGCAAACGCGAG
ATCACCATCAGCCCTCTCCACGCTCCAAATGCTCCCGCGAGGCTGCCCCTTTCCGAATTC
ATGCTCGGCCTGGCCAACAAGGTCATGGGCTGGGTTATCGTGCTGCTCTCCCTCGTTGTC
GCGGTCCTCGTCTGGGAATTCATCATGCCCATCACCACTCTCTGGACATGGCGCCTCGCT
CTCTCAGGAGCTTTGCTC

Homology of Contig U35_32350 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g01040.1	611	1e-56	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi3g12860.4	672	5e-67
Arabidopsis v10	None