- Probe CUST_29837_PI390587928
- Source Contig U35_23871
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_29837_PI390587928 | Hv_44K_v2 | CGCAATCACATTCAACTTCCTGTTTGGCTGGTTTATGTCTTGTTGCTTGTTGTTGGCAAA | 567 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_56864.2 | 1126 | 6e-24 | 26 - 84 | 100 | 59 / 59 | minus | ABC12636 ABC28988 |
MLOC | MLOC_56864.1 | 1358 | 6e-24 | 147 - 205 | 100 | 59 / 59 | minus | ABC12636 ABC28988 |
JLOC1 | JLOC1_36807.1 | 1289 | 3e-24 | 1099 - 1157 | 100 | 59 / 59 | plus | |
Harvest21 | ABC28988 | 438 | 5e-23 | 365 - 423 | 98 | 58 / 59 | plus | ABC28988 |
Harvest35 | U35_23871 | 641 | 3e-25 | 568 - 627 | 100 | 60 / 60 | plus | |
Harvest35 | U35_29620 | 438 | 5e-23 | 365 - 423 | 98 | 58 / 59 | plus |
Contig Sequence (641 bp)
>U35_23871 641 Hv_44K_v2 AACAACGTGCATCTTGATGGCAAACCTATGAAAATTGAAGTCATTGGGACAAACATTGAG GCACCTGCACCCATACCTGCTATTTTTGCTTTGGCTCCACCGCCTGGAAACTTCAGTTTT CCTTCCAAAAGTGGACCTGCAATGGGTGTTGGCGGTCGAGGATGGTCTCGTGGCGGAGGT GGGTTCAGTGCTCGCAGCGGAGGTGGGTTCGGTGGTCGTGGCCGAGTCCGTAGCGACCAT GGGCGAGGGAAGGGAGGGCGGGGCAACCTGGAAATTTCTGCTGCAGATCTCGACGCCGAC TTGGACAAGTACCACTCGGCTGCAATGGAGATCAGCTAAATGGATCTGGTACTGCCTTGC GTCTGTTCTTGTTTTATTTGTAGTGATATATGGCCCTGACCTATATTAGTTGGATAACGA TCTTTTATGCTAACCTGGCATGGTAGAAGGTAGCATTGGGTGATGAAAATGGAGGGGAAC GTGTTTGTGTGATGAGGTGCCATTGCTTGGTTTGCGGTGTAGCAGGAGGGATGGAATTGG TCTATTTGAGATGAGATTTTTTGAAGCCGCAATCACATTCAACTTCCTGTTTGGCTGGTT TATGTCTTGTTGCTTGTTGTTGGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_23871 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |