barSeed - Barley Seed Development Database

Probe CUST_29836_PI390587928

Source Contig U35_23872

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29836_PI390587928	Hv_44K_v2	TATGTATGAATGCACGTGACATGTATTCCCTTTATGTGTTGTCACTCAGACGCCCGACTG	653	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4646.1	879	2e-24	172 - 231	100	60 / 60	plus	ABC13024 ABC17862 ABC18880 ABC20943
JLOC1	JLOC1_2922.1	997	8e-25	695 - 754	100	60 / 60	plus
Harvest21	ABC18880	749	3e-25	654 - 713	100	60 / 60	plus	ABC18880
Harvest35	U35_23872	749	3e-25	654 - 713	100	60 / 60	plus

Contig Sequence (749 bp)

>U35_23872 749 Hv_44K_v2
CAGCGAGAGGATGAGTCCCTTCCCCCTAAACGCGTCGGTGTGCCTAGCTCCAGGAAATAT
GCCTTCTAGCACCGGCAATTGCCATCGGCGTCGACTCCTTCTCCTTGTCCATGCGTGCGA
GGGAGGAAGACGAACCCTATGGGTGGCCCCCACCTGTCGGTGGGGTAGTAGATGCCTCCA
ATGGCACACCCGTGCTGGTGTGCGTCCTCTGCCAGAAAGTAAACACACAAAAGTATGCTT
CCCCTCTTCTTTTAAAGTATTCTTCTTGAAACATTTTCTTTTTTCTGTTTTATTTAAAAA
ATCAGATTTGATCTAATTTTGACTGCTTATAACTTTTAAAATACAACTCCAAATGAGTTG
ATTCTTTTTCTGTTATTTCTTAAATTTCACCTAGTTTATTGTCATATTTATTTCAAGAAA
TTTCAAACAACTTTTTTACACTGTTTTGGGAATGTGTGTTGATTCCATTATTTTCAAAAA
TAGGAAAATTGGAGGGAGGAATCCTTTCGAAGATTTTGGAGTGCACGGCACCCTTCTTCA
TAGCCAAGGCAAGCATCTTGAAGACTGATTTTTCCTAAGCTAAGTGGTTGCTTGCTGCGA
AAAATGATTGCATGATATGTTTGTAAGATCAAAATTTCCATATAGGAAGTATTTATGTAT
GAATGCACGTGACATGTATTCCCTTTATGTGTTGTCACTCAGACGCCCGACTGGGCAACT
ATTATTTTTTCATAAAAAAAAAAAAAAAA

Homology of Contig U35_23872 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None