barSeed - Barley Seed Development Database

Probe CUST_29819_PI390587928

Source Contig U35_47831

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29819_PI390587928	Hv_44K_v2	TTCCACTATGGAAGCATACCAATGAACTTCAGGGGGAACTGGGAGGTTGCGCGGCACGAT	365	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56995.11	1792	7e-23	964 - 1023	98	59 / 60	plus	None
MLOC	MLOC_56995.2	1569	7e-23	1000 - 1059	98	59 / 60	plus	None
MLOC	MLOC_56995.7	1423	7e-23	894 - 953	98	59 / 60	plus	None
MLOC	MLOC_56995.8	1137	7e-23	750 - 809	98	59 / 60	plus	None
MLOC	MLOC_56995.3	1338	7e-23	911 - 970	98	59 / 60	plus	None
MLOC	MLOC_56995.9	2005	7e-23	1280 - 1339	98	59 / 60	plus	None
MLOC	MLOC_56995.6	2358	7e-23	919 - 978	98	59 / 60	plus	ABC02857 ABC02858
MLOC	MLOC_56995.10	1688	7e-23	1280 - 1339	98	59 / 60	plus	None
JLOC1	JLOC1_36891.5	1506	4e-23	679 - 738	98	59 / 60	plus
JLOC1	JLOC1_36891.4	2005	4e-23	1178 - 1237	98	59 / 60	plus
JLOC1	JLOC1_36891.3	2022	4e-23	1178 - 1237	98	59 / 60	plus
JLOC1	JLOC1_36891.2	1719	4e-23	892 - 951	98	59 / 60	plus
JLOC1	JLOC1_36891.1	1736	4e-23	892 - 951	98	59 / 60	plus
Harvest21	ABC49307	425	3e-25	366 - 425	100	60 / 60	plus
Harvest35	U35_47831	425	3e-25	366 - 425	100	60 / 60	plus

Contig Sequence (425 bp)

>U35_47831 425 Hv_44K_v2
CTTTGGGGCGAGGGCCCATGGGTGACCACCTCGCGCTGCTGGTGGACCGGCTGCTCACGG
AGTCCACGCTGGAGGCGGCCATCGGGAGCCGCAAGCAGCCGGAGGCGGTGGCCATCGAGT
ACTGCTGCGGCCTCCCCGCCGTCGCCGGCGACCGCGGGCCGCCGACGCCGAGCAAGATGG
TGGAGTGCAGGATCTGCCAGGAGGAGGACTGGGACGCCGGCATGGAGGCACCCTGCGCCT
GCCGCGGCAGCCTCAAGTATGCGCACCGGAAATGCATCCAGCGTTGGTGCAACGAGAAGG
GCGACACCGTCTGCGAAATATGCTTGCAGCAATTCAGGCCAGGTTACACTGCCCCACAGC
AGCTGTTCCACTATGGAAGCATACCAATGAACTTCAGGGGGAACTGGGAGGTTGCGCGGC
ACGAT

Homology of Contig U35_47831 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03100.2	235	5e-75	protein\|protein binding protein, putative, expressed
Brachypodium v1_2	Bradi2g01580.1	272	3e-75
Arabidopsis v10	None