barSeed - Barley Seed Development Database

Probe CUST_29816_PI390587928

Source Contig U35_47836

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29816_PI390587928	Hv_44K_v2	CACTCTGATGGTGTAAAGCTAGATGTCCTAATTATTTGGGGGATCGAGTGTTCATTTTTT	341	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_42944.1	237	3e-21	126 - 185	97	58 / 60	plus	ABC26240
JLOC1	JLOC1_27748.1	186	2e-21	123 - 182	97	58 / 60	plus
Harvest21	ABC49317	445	3e-25	342 - 401	100	60 / 60	plus
Harvest35	U35_47836	445	3e-25	342 - 401	100	60 / 60	plus

Contig Sequence (445 bp)

>U35_47836 445 Hv_44K_v2
GGAAAGGTTTGCAGCCAAAGAGCAATATAAGCAATCCAAGGAGCTTGATAGGCTGATTAG
GCGGCCGGCGTGCTCGCTTGGGGCGTCGGACCAAGCACGGCAGCATCGGCGGCACCGTCG
TGGGTCTGGTGTCGATGCTCACCACCAGCACTGGCTGCAAGATGGTCGCGTTGCTCGGGC
GCCACAGCGGCAGCATCCTCCGGCTGCAAGATGGTCGCGCTGCTCAGGTGGCACAACAGA
AGGAGGGCCCGGGCGCCGCCGGCGTTCCTCATTATACTGCCCGTGCTGGCGGGTGCGCTG
CACACGGAGGTGGTCGCGTGAAGACTGGAGATGCATCCTGCCACTCTGATGGTGTAAAGC
TAGATGTCCTAATTATTTGGGGGATCGAGTGTTCATTTTTTTTGACAAAGTGTTCATTTC
TTCTTGTCGCAGTAGCACACACCGT

Homology of Contig U35_47836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None