barSeed - Barley Seed Development Database

Probe CUST_29798_PI390587928

Source Contig U35_47843

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29798_PI390587928	Hv_44K_v2	CGGCGCCGCGTTCTGCCGCCGCCGCGTGCTCGTCAAGGCCGGCGGGAAGATCCGACGCCA	179	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360531	1382	7e-23	671 - 730	98	59 / 60	plus	ABC42140
Harvest21	ABC49339	300	3e-25	180 - 239	100	60 / 60	plus
Harvest35	U35_47843	300	3e-25	180 - 239	100	60 / 60	plus

Contig Sequence (300 bp)

>U35_47843 300 Hv_44K_v2
GGCGGCACGCAGGAGAGGATCTACGGCCGGCGCCTGCTGGACGCGCTGCGGGCCACGCGG
TCCGGCGCCGTGTCCTCCGCGCACCACACGCAGCCGCGCGCCGTCAAGGCGGCCGCCGAT
TCCGCGCTGGCGCTCACGGCGCGCGGACAGTCGCGCTGGAGCCGCGCCATCCTGCTGGCC
GGCGCCGCGTTCTGCCGCCGCCGCGTGCTCGTCAAGGCCGGCGGGAAGATCCGACGCCAC
CGCCGCCCGCAGGCGCGCGCCGCGGCCGTTGCGTCCAAGGCCGCGGTCGCCGGCGAGCCA

Homology of Contig U35_47843 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None