barSeed - Barley Seed Development Database

Probe CUST_29765_PI390587928

Source Contig U35_47861

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29765_PI390587928	Hv_44K_v2	TCATTCAAGACTATGAGAAATCTGGAGAGTACACAGGTTTCCCTATACTTGGGATAGAAT	271	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.353	1.840	1.197	0.659	0.504	0.342
Raw	473.248	526.192	325.239	260.367	74.767	55.209

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359231	2129	2e-24	1003 - 1062	100	60 / 60	plus	ABC09517 ABC13939 ABC40320
JLOC1	JLOC1_19066.1	1349	8e-25	793 - 852	100	60 / 60	plus
Harvest21	ABC49366	494	3e-25	272 - 331	100	60 / 60	plus
Harvest35	U35_47861	494	3e-25	272 - 331	100	60 / 60	plus

Contig Sequence (494 bp)

>U35_47861 494 Hv_44K_v2
GAGGATGCTGTCACCGTTGTTGGTTACCCTATTGGAGGAGATACAATTTCTGTGACAAGT
GGTGTAGTATCTAGGATAGAAATACTCTCATATGTTCATGGTTCTACAGAACTTCTTGGA
CTACAGATAGATGCAGCTATAAATTCAGGAAACTCTGGGGGTCCTGCTTTTAATGATCAG
GGAAAATGCGTTGGTATAGCTTTTCAATCTCTTAAACACGAAGATGCAGAAAACATAGGT
TATGTTATACCCACCCCGGTTATTAAGCACTTCATTCAAGACTATGAGAAATCTGGAGAG
TACACAGGTTTCCCTATACTTGGGATAGAATGGCAGAAAATGGAAAATCCTGATCTCCGT
AAGGCAATGGGAATGAAATCTGACCAAAAGGGTGTTCGTATCAGAAGAATTGAACCAACT
GCTCCTGAATCTGGATGCATGCAACCTTCTGATATTATTCTTAGCTTTGATGGTATTGAG
ATCGCCAATGACGG

Homology of Contig U35_47861 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50880.1	568	2e-107	protein\|OsDegp3 - Putative Deg protease homologue, expressed
Brachypodium v1_2	Bradi1g44967.1	600	1e-108
Arabidopsis v10	AT5G40200.1	592	1e-99	\| Symbols: DegP9 \| DegP protease 9 \| chr5:16070402-16073101 FORWARD LENGTH=592