barSeed - Barley Seed Development Database

Probe CUST_29743_PI390587928

Source Contig U35_47883

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29743_PI390587928	Hv_44K_v2	GGAATTGTACTGCTATGTGATGCATAATTTGATCGTCTTGTGATCGAAAGACATCATATA	1403	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364013	3324	2e-24	1405 - 1464	100	60 / 60	minus	ABC00120 ABC00610 ABC00897 ABC00945 ABC18158 ABC49781
MLOC	AK248519.1	1360	2e-24	1236 - 1295	100	60 / 60	plus	ABC00120 ABC00610 ABC00897 ABC00945 ABC49781
MLOC	AK248545.1	1099	2e-24	968 - 1027	100	60 / 60	plus	ABC00120 ABC00610 ABC00897 ABC00945 ABC49781
JLOC1	JLOC1_28006.2	1341	8e-25	894 - 953	100	60 / 60	plus
JLOC1	JLOC1_28006.1	1584	8e-25	1137 - 1196	100	60 / 60	plus
Harvest21	ABC49395	1529	3e-25	1404 - 1463	100	60 / 60	plus
Harvest21	ABC00945	648	3e-25	552 - 611	100	60 / 60	plus	ABC00945
Harvest21	ABC00897	1099	3e-25	979 - 1038	100	60 / 60	plus	ABC00897
Harvest21	ABC00495	1774	3e-25	1216 - 1275	100	60 / 60	plus
Harvest35	U35_47883	1529	3e-25	1404 - 1463	100	60 / 60	plus
Harvest35	U35_35267	808	3e-25	61 - 120	100	60 / 60	minus
Harvest35	U35_371	1119	3e-25	979 - 1038	100	60 / 60	plus
Harvest35	U35_194	2201	3e-25	1216 - 1275	100	60 / 60	plus

Contig Sequence (1529 bp)

>U35_47883 1529 Hv_44K_v2
GAATTCCTTTTTTCGCTGCTACTACTAACATTGCATAAATCATACTGCTGGCACGCAGTG
ATCAAGTAGTACAGTCGTGCACCAGCACCCCATGAAATTGCTACGTTTGTCACTGTTTGT
TGGTAGAGTAGACTGTAGACACGCAAATAAGGTACGTGCAACGGGCAGGAAGCAAGACGT
GGGTACGAGACGCTGCAACGCCGTGAGACCAACACGCGGTGCCAGCTCCTCCTGCGCACA
GACCCGATGTCGTTGCAGATTGGGCGGACAGAGAGGGCCCGGTCCCCGGTCTTTGTCTTT
GCACACAAGCGGCAACTGCTCCATGGACGGTGTAGTACCATCGACAATGCAAATTGCAGC
ACCTGCAGCATGAAAATCAATAGCACTTGTACATTGACGGCCCTGCCGATTGCCGCACTG
CCTGGGCCACGTACTACCTCACACTACTCGACCGCCGCGGCTAACTGGTGCTACGCAACC
GTCGCGCCCCGTGCCCGCTCCTCCACCATCGCCGCCAGCCTCGGCACCCCCGCGCCCTCC
TCCTCCGCCTCCTTCCGCCCCAAGCTCATCAGGACCACCCCCGTCCAGGCCGCGCCCGTC
GCACCTGCATTGATGGACGCCGCCGTGGAGCGCCTCAAGACCGGGTTCGAGAAGTTCAAG
ACCGAGGTCTACGACAAGAAGCCCGATTTCTTCGAGCCGCTCAAGGCCGGCCAGGCGCCC
AAGTACATGGTGTTCGCGTGCGCCGACTCGCGTGTGTGCCCGTCGGTCACCCTGGGCCTT
GAGCCCGGTGAGGCCTTCACCATCCGCAACATCGCCAACATGGTCCCGGCCTACTGCAAG
AACAAGTACGCCGGTGTTGGATCGGCCATCGAATACGCCGTCTGCGCGCTCAAGGTTGAG
GTCATCGTGGTGATTGGCCACAGCCGCTGCGGTGGAATCAAGGCTCTGCTCTCGCTCAAG
GATGGCGCAGACGACTCCTTCCACTTCGTTGAGGACTGGGTCAGGATCGGGTTCCCGGCC
AAGAAGAAGGTGCAGACTGAGTGCGCCTCCATGCCTTTCGATGACCAGTGCACCGTCCTG
GAGAAGGAGGCCGTCAACGTGTCCCTCCAGAACCTCTTGACCTACCCGTTCGTCAAGGAG
GGTGTGACCAACGGAACCCTCAAGCTCGTCGGCGGCCACTACGACTTCGTCTCCGGCAAG
TTCGAAACATGGGAGCAGTAAATCTTCCCCACCGGTTAACTCCGACATATACAAACGTAC
ATATATCAAGATATCGTCCGATCGATGTGAATGCAATGCCATGGGAGTGCGTACCCGTTA
TTGTCCAGTACTGGATGCCGGATGGCCCGATGTGAATTTGCCATAAGCAATAGAACCTTT
TTTTCTTCACCATTTTCTGACGAGGAATTGTACTGCTATGTGATGCATAATTTGATCGTC
TTGTGATCGAAAGACATCATATATAAGTTTAATATAATATTTTCATGAACCGTTTACCTT
TTTATTACCCTTTCAAAAAAAAAAAAAAA

Homology of Contig U35_47883 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g45274.1	273	2e-135	protein\|carbonic anhydrase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g44856.1	203	2e-134
Arabidopsis v10	AT5G14740.1	331	1e-77	\| Symbols: CA2, CA18, BETA CA2 \| carbonic anhydrase 2 \| chr5:4758257-4762382 FORWARD LENGTH=331