barSeed - Barley Seed Development Database

Probe CUST_29710_PI390587928

Source Contig U35_5491

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29710_PI390587928	Hv_44K_v2	TATGACCAGGCAACTTGTGTATATGGAAAACTTGAAAGAGGGCAGATTAGTTCAGTTAAA	733	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78185.1	1076	2e-23	909 - 966	100	58 / 58	plus	ABC12242
JLOC1	JLOC1_52112.1	927	1e-23	58 - 115	100	58 / 58	minus
Harvest21	ABC12242	807	3e-25	734 - 793	100	60 / 60	plus	ABC12242
Harvest35	U35_5491	807	3e-25	734 - 793	100	60 / 60	plus

Contig Sequence (807 bp)

>U35_5491 807 Hv_44K_v2
GGTGGCCTTGGAAATTGGCAGAACCAAAAGATTCCATATATGTACTTGACAACTGCCCTC
ATGACTGGCTTTTCCTGCAGTGTAAGGCAGTGGTACACCATGGTGGTGCTGGAACGACGG
CTGCTGGCCTGAAAGCAGCGTGTCCTACAACTATTGTACCTTTCTTTGGCGACCAACCTT
TCTGGGGAGAGCGGGTGCATGCTAGAGGGGTAGGGCCTTCGCCTATACCTGTTGATCAAT
TCAGTTTGCAGAAGTTGGTTGATGCTATAAACTTCATGTTAGATCCAGAGGTGAAAGAAA
AAGCCGTGGAGCTTGCAAAGGCCATGGAATCTGAAGACGGCGTAACGGGCGCAGTTAGGG
CATTCCTCAAACATTTGCCTTGTAAAACAGATGAAAATTCACCCCCGCCGACGCATGGCT
TTCTAGAGTTCCTTGGCCCAGTAAGTAAATGTTTGGGGTGCTCTTAGGTGCTGGTCAGAT
GCAGGTATACCATTCCTCCCTGCTGAAAGAAGAGTGTAAAAAAAGGCTCTTGGGTGACCG
CTATGCCATTGTGTGCGATAAGAATGTGGAAGCCAAATGTTAGAAGTTGATGTACATGCG
GCCAGGAATGCGTGATTTATCATTTTGCTTTCTTTTTGTATGTGTGTTGTGTAAAGAGTA
CTTGTCTGGTGATTTCATACATCATTTTGGTGTGGTTGCAACCTTGGCGTGCGGCAACCG
ATGATCTCTCATGTATGACCAGGCAACTTGTGTATATGGAAAACTTGAAAGAGGGCAGAT
TAGTTCAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5491 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g04254.2	587	2e-75	protein\|sterol 3-beta-glucosyltransferase, putative, expressed
Brachypodium v1_2	Bradi5g01230.1	615	6e-79
Arabidopsis v10	AT3G07020.2	637	6e-56	UDP-Glycosyltransferase superfamily protein \| chr3:2218120-2221590 REVERSE LENGTH=637