barSeed - Barley Seed Development Database

Probe CUST_2968_PI390587928

Source Contig U35_11333

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2968_PI390587928	Hv_44K_v2	TGGTGAGAGTATGAGAGTTTGCAAGCAGCCGGATCTGTCAATACTTCAAATTCCGTCCAT	35	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73240.1	1412	2e-24	1290 - 1349	100	60 / 60	minus	ABC13312
JLOC1	JLOC1_48753.1	1465	8e-25	1275 - 1334	100	60 / 60	minus
Harvest35	U35_11333	530	3e-25	36 - 95	100	60 / 60	plus

Contig Sequence (530 bp)

>U35_11333 530 Hv_44K_v2
AAGGCCCGAATGTATTCTTACCATCTACTTAAGCCTGGTGAGAGTATGAGAGTTTGCAAG
CAGCCGGATCTGTCAATACTTCAAATTCCGTCCATGGCCTCCGTTGATGACCATGAGCGC
CTCCGTGCCATCAAGGCGTTCGACGACACCAAGGCCGGCGTCAAAGGCCTCGTCGACGCG
GGCGTCACCACTGTCCCGTCCATCTTCCACCACCCGCCGGAATCCCTTCCCAGCAGCGAG
GTCGTAGTGCCAGCCCATCGCTTCACCATCCCGCTCATCGACCTGTTAGCTGGCGTGCGG
GCTGACATGGTCTCCGCCCTGAAGGTGGCCGCGGAGACGGTGGGCTTCTTCCAGCTGGTG
AACCACGGCGTGCCGGACGACCTCCTTGCCGAGATGCTCGCGTCGGTGCGCCGCTTCCAC
GAGTCTCCGGCGGAGACGAAGCGGCCGTACTACAGCCGGGACCACCGCCGACGCGTCCGG
TACAACTCCAACTTCGACCTNGTCACCTCGCCGGCGGCCAACTGGCGTGA

Homology of Contig U35_11333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g64280.1	370	9e-51	protein\|1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed
Brachypodium v1_2	Bradi3g16110.1	358	2e-55
Arabidopsis v10	None