barSeed - Barley Seed Development Database

Probe CUST_29668_PI390587928

Source Contig U35_22509

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29668_PI390587928	Hv_44K_v2	CTTACGTGTAGTTCAGGTACTCCATTGATATGCTCTTCCTTCGTATTTTTTAGATGTGCC	718	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.861	1.650	1.211	0.735	0.239	0.269
Raw	53.815	75.144	49.106	48.888	3.575	5.998

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC22799	659	3e-25	1 - 60	100	60 / 60	minus	ABC22799
Harvest35	U35_22509	778	3e-25	719 - 778	100	60 / 60	plus

Contig Sequence (778 bp)

>U35_22509 778 Hv_44K_v2
CTGTAAGTGAAGATTCTGTCAAGGTGTGGTCATTTACTTCAGGAAATGACGGCGACCGTG
TGAATGAGTTGAATTGCAGTGGAAACAAGTTCAATTCTTGTGTTTTTCACCCGAATTATC
CGTCATTGCTTGTAATTGGTTGTTACGAGTCCTTGGAACTTTGGGACATAAGGGAGAAGA
ATACGGTGACCATCAGCAACGCCCATGACGGCTTAATTGCAGCCCTAGCTGCATCAAATG
CATCAGGGTTGGTCGCCTCAGTAAGTCATGATAAGCTTGTCAAGCTCTGGAAGTGATATC
AGGTAGCAACCTTCCTTCTACGTCAAACAAGTTGGTCCTTGCGGACATCTGTCGTCCAGT
TCCAGCCAACGTTTTATGATGTAGAAACAGGGCGTTTTTCTGCTGCAGATAAACACATGA
CGAGGGCAGCTCATGAAAATGTCTTCAGCTATCTGTGTTCAAGAACTAACCCAATTTGAT
GTCATCCCAGTTGCTGCAGGTGCCCTTGGATAGGTCTAACTATCCTTGTAGAATGTACCA
TACTTGTAGTGGCCTGCGCAAACTCTAGAGTGTTGTTATCATTGACTGGTCACAAGCACA
GAAGCCTTTATGTATTTTCTGACTGCATTTTTCTCAATTGCGTTTGCTCTTATTTCCCCT
TTCTCTTTGTGTGCCCCCAAATTCTCCAAGTCAGATGTGTCCGCCTGTTGCCTAAAAGCT
TACGTGTAGTTCAGGTACTCCATTGATATGCTCTTCCTTCGTATTTTTTAGATGTGCC

Homology of Contig U35_22509 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g43087.1	911	2e-54
Arabidopsis v10	None