barSeed - Barley Seed Development Database

Probe CUST_29637_PI390587928

Source Contig U35_22524

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29637_PI390587928	Hv_44K_v2	AGCCTGTTGAACAGATAAACATTGCCAATGAGCTGAAGTTTAAGAAAGTAGTTACTTACA	840	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361122	2550	2e-24	1014 - 1073	100	60 / 60	plus	ABC12604 ABC19394 ABC49863
MLOC	AK364522	2488	2e-24	1014 - 1073	100	60 / 60	plus	ABC12604 ABC19394 ABC49863
MLOC	MLOC_11454.1	329	2e-24	171 - 230	100	60 / 60	plus	None
JLOC1	JLOC1_7587.1	505	8e-25	171 - 230	100	60 / 60	plus
Harvest21	ABC17098	960	3e-25	841 - 900	100	60 / 60	plus
Harvest35	U35_22524	960	3e-25	841 - 900	100	60 / 60	plus

Contig Sequence (960 bp)

>U35_22524 960 Hv_44K_v2
GGCTGGAGACAGGGGACTTCGACCGCGCCCGCGTCCACCCCAAGCTCCTCCACACCAACG
CCACCTCCCACAAGTGGGCCTTCGGAGCTATATCTGAGCTCCTTGACAATGCGGTAGACG
AGATCTGCAATGGCGCCACGTTCATAAAAGTGGATAAAAGCACCAACGTGAAAGACAACA
GTCCAATGCTGGTTTTTCAAGACAATGGAGGAGGGATGGATCCCGAAGGGGTGCGCCACT
GCATGAGTCTAGGATTCTCAACCAAGAAATCAAAGACAACCATTGGCCAGTACGGAAATG
GCTTTAAGACGAGCACAATGAGACTTGGTGCTGATGCAATGGTTTTTACTCGTGCAATAC
GTGAAAGTAATGTTACCTTGAGTATTGGTTTGCTCTCTTACACTTACCTGAGGAGAACAA
TGAAGGATGACATAGTTGTCCCTATGCTCGATTTTGAAGTCAAAGACGGGCAAATAGTAC
CTTTGGTTTATGGTTCACAGGGTGATTGGGATAGTAGCCTAAAGATAATACTTGACTGGT
CCCCTTTTTCTTCGAAGGAAGAACTGCTACAGCAGTTTGAGGATATGGATAGTCATGGAA
CTAAGGTGGTGATATACAATTTATGGATGAATGACGATGGCCTTTTAGAACTTGACTTTG
ATGATGATGAGGAGGACATATTGCTTCGGGATCAAGGTCAAAACAGTGGGGCGTCAACAA
AGATTCAAAAAGAAATTATTCAGCAACATATATCTCACAGACTCAGATTTTCATTGCGAG
CATATAGCTCCATCCTTTACCTCAGGAAGTTTGAGAACTTCCAAATTATATTAAGAGGAA
AGCCTGTTGAACAGATAAACATTGCCAATGAGCTGAAGTTTAAGAAAGTAGTTACTTACA
AACCTCAAGTTTCCCATGATTCTCAAGTGGTGTCAGTGAAGGTAGATATTGGCTTTGCAA

Homology of Contig U35_22524 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g10190.1	610	0.0	protein\|ATP-binding region, ATPase-like domain containing protein, expressed
Brachypodium v1_2	Bradi3g22750.2	603	0.0
Arabidopsis v10	AT4G36280.1	626	6e-125	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein \| chr4:17165513-17169277 REVERSE LENGTH=626