barSeed - Barley Seed Development Database

Probe CUST_29605_PI390587928

Source Contig U35_15792

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29605_PI390587928	Hv_44K_v2	GTATCTATAGTTCTATACACACTATGACACCAACTATTTATATAAGGCAGCTGTTGCATC	322	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64555.1	3913	2e-24	85 - 144	100	60 / 60	minus	ABC04451 ABC04452
MLOC	MLOC_64555.2	3569	2e-24	64 - 123	100	60 / 60	minus	ABC04451 ABC04452
JLOC1	JLOC1_42402.2	3612	8e-25	3455 - 3514	100	60 / 60	plus
JLOC1	JLOC1_42402.1	3800	8e-25	3643 - 3702	100	60 / 60	plus
Harvest21	ABC04451	2450	3e-25	2350 - 2409	100	60 / 60	plus	ABC04451
Harvest21	ABC43056	390	1e-23	41 - 100	98	59 / 60	minus
Harvest35	U35_15794	1550	3e-25	1450 - 1509	100	60 / 60	plus
Harvest35	U35_15792	399	3e-25	323 - 382	100	60 / 60	plus

Contig Sequence (399 bp)

>U35_15792 399 Hv_44K_v2
AGGGTGAAGATCGACCCTTTCATATCCGATACCCAGAAAGCCGTCGCCATGGGGCAGTGT
GGCGTCAACTGCTGATCGGCGCCGAAGAGTATCTGACCCCCTCCGGTATTTACACGAGGG
GGGCAGATACCGGAGGGGGTTGGATGGGATTTTGTTGTTGTAGATGAAGACGGAGTTTTA
TGTAAGTTATTATTGCCCCTTCGTGCTGAGAAGCACAAACCGTGAAGCCTACGAAACCTG
CAGCGTACATTGTGATTTTTTTCTCCTTTTCTTTTCATCTGTGATACCTGTTGTTTCTTC
TTAGAGTATATTATGTCAGAACGTATCTATAGTTCTATACACACTATGACACCAACTATT
TATATAAGGCAGCTGTTGCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15792 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None