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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_29604_PI390587928Hv_44K_v2TGCCCCCATTTGTGGTACCTGTTCTTTGTTGCTTAGAGTATATCATGTCAGAATTGTATT2315GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9411.1631.4121.4150.7480.712
Raw 2557.5374878.3005277.6978257.1971549.1501592.733



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36703129192e-242804 - 286310060 / 60plus ABC04451 ABC04452 ABC35040
MLOCMLOC_55081.121742e-24100 - 15910060 / 60minus ABC04451 ABC04452 ABC35040
MLOCMLOC_55081.28162e-2456 - 11510060 / 60minus ABC04451 ABC04452 ABC35040
JLOC1JLOC1_35506.119738e-251669 - 172810060 / 60plus
Harvest21ABC350401403e-2563 - 12210060 / 60minusABC35040
Harvest21ABC0445220103e-251887 - 194610060 / 60plusABC04452
Harvest35U35_1579324383e-252316 - 237510060 / 60plus



Contig Sequence (2438 bp)

>U35_15793 2438 Hv_44K_v2
TGTTCTGTCCATTCTTGCTGTGGATTACCCTGTCGACAAAGTGTCATGCTATGTTTCTGA
TGATGGTTCGGCTATGTTGACGTTTGAGTCGCTCTCAGAAACTGCAGAATTTGCTAGGAA
GTGGGTTCCATTCTGCAAGAAGCACAACATTGAACCAAGGGCCCCAGAGTTTTACTTTCA
GCAAAAAATAGATTACCTGAAGGACAAAATTCAGCCTTCTTTTGTGAAGGAAAGGCGAGC
AATGAAGAGAGAGTATGAAGAATTTAAAATACGAATCAACGCACTTGTTGCCAAAGCCCA
AAAAGTGCCCGAAGAGGGGTGGACCATGGCCGATGGCACCGCTTGGCCTGGGAATAACCC
TAGGGACCATCCTGGCATGATTCAGGTGTTCTTGGGGCACAGTGGTGGCCTTGACACTGA
TGGTAATGAGTTGCCACGGCTTGTGTATGTCTCTCGTGAAAAGAGACCAGGTTTCCAGCA
TCACAAGAAGGCTGGTGCAATGAATGCACTGATTCGCGTATCTGCTGTGTTGACAAATGG
TGCCTATCTTCTTAATGTGGATTGTGATCACTACTTCAATAGCAGCAAAGCTCTTAGAGA
AGCAATGTGCTTCATGATGGATCCCGCTCTAGGAAGGAAGACTTGCTATGTCCAATTTCC
ACAAAGATTTGATGGCATTGATTTGCACGATCGATATGCTAATCGCAACATAGTTTTCTT
TGATATCAACATGAAAGGTTTAGATGGCATTCAGGGTCCAATGTATGTCGGGACAGGATG
CTGTTTCAACAGGCAGGCCTTGTATGGCTATGATCCTGTATTAACTGAGGCTGATTTGGA
ACCTAACATTGTTGTTAAGAGCTGCTGCGGTGGCAGAAAGAAAAAGAACAAGAGCTATAT
GGATAACAAAAACCGCATGATGAAGAGAACTGAGTCTTCTGCTCCCATCTTCAACATGGA
AGATATAGAAGAGGGTATAGAAGGTTATGAGGATGAAAGGTCGATGCTTATGTCCCAGAA
GAGATTGGAGAAACGATTTGGCCAGTCTCCTATATTTACTGCATCCACCTTTATGACTCA
AGGAGGCATACCACCTTCAACAAACCCAGCTTCTCTACTAAAGGAAGCCATCCATGTCAT
CAGCTGTGGATATGAGGACAAAACCGAATGGGGAAAAGAGATTGGCTGGATCTATGGTTC
AGTTACTGAAGATATTCTTACTGGGTTTAAAATGCACGCAAGAGGTTGGATATCAATCTA
CTGTATGCCACCACGGCCTTGTTTCAAGGGTTCTGCGCCAATCAATCTGTCTGACCGTCT
TAATCAAGTGCTGCGATGGGCTCTCGGGTCAGTTGAAATTCTGTTTAGCAGACATTGTCC
TATCTGGTACAATTACGGTGGGCGGTTGAAACTTCTGGAGAGGGTGGCTTACATCAACAC
CATTGTTTATCCAATAACATCCCTCCCACTTATCGCCTATTGTGTGCTTCCTGCTATCTG
CCTCCTCACCAACAAGTTTATCATTCCTGAGATCAGTAATTATGCTGGGATGTTCTTTAT
TCTCATGTTTGCGTCCATTTTTGCCACTGGTATATTGGAGCTCCGATGGAGTGGTGTCGG
CATCGAGGACTGGTGGAGAAACGAGCAGTTTTGGGTCATTGGTGGCACGTCTGCCCATCT
TTTCGCGGTGTTCCAGGGTCTGCTCAAGGTGCTGGCTGGGATCGACACCAACTTCACGGT
TACCTCCAAGGCAAACGACGAGGACGGCGACTTTGCAGAGCTATACGTGTTCAAGTGGAC
CAGTCTCCTCATCCCTCCGACCACCGTCCTCGTGATCAACCTGGTGGGCATGGTGGCAGG
CATATCATACGCCATCAACAGCGGTTACCAATCCTGGGGCCCGCTCTTTGGAAAGCTCTT
CTTCTCAATCTGGGTGATCCTCCATCTCTACCCCTTCCTCAAGGGTCTCATGGGGAAGCA
GAACCGCACGCCGACCATCGTCATCGTTTGGTCGATCCTCCTCGCCTCCATCTTCTCCCT
CCTCTGGGTGAAGATCGACCCTTTCATTTCCGATACCCAGAAGGCCGTTGCCATGGGGCA
GTGCGGCGTCAACTGCTGATCGGATCATCGGCGCTCGGGAGTATCTGCCCCCCTAGTGTA
AATACCGGAGGGGGTTAGACGGGATTTTTTGGTTGTAGATGAAGACGGAAGGATTTTTAT
CTAAATTATTGCCCCTTTGTTAGTCGCCCCATGCCGCTGAGAACCACTGTCTACGAAACC
TGCAGTGTACATTGTGATTTTTTTCTCCTTTTTTTTGCCCCCATTTGTGGTACCTGTTCT
TTGTTGCTTAGAGTATATCATGTCAGAATTGTATTTATACACTATGACACCAACAATTTA
TATAAGGCAGCTGTTGCATCAAAAAAAAAAAAAAAAAA



Homology of Contig U35_15793 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g08370.110770.0protein|CESA1 - cellulose synthase, expressed
Brachypodium v1_2Bradi2g34240.110790.0
Arabidopsis v10AT4G32410.110810.0| Symbols: CESA1, RSW1, AtCESA1 | cellulose synthase 1 | chr4:15641009-15646388 REVERSE LENGTH=1081