barSeed - Barley Seed Development Database

Probe CUST_29603_PI390587928

Source Contig U35_15794

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29603_PI390587928	Hv_44K_v2	GTTCTTTATTCTTATGTTTGCCTCCATCTTTGCCACGGGTATATTGGAGCTGCGATGGAG	651	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.511	0.734	1.828	2.674	0.884	0.727
Raw	45.539	106.767	223.523	535.504	60.588	54.469

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357056	3387	2e-24	2643 - 2702	100	60 / 60	plus	ABC04451 ABC04452
MLOC	MLOC_64555.3	3772	2e-24	734 - 793	100	60 / 60	minus	ABC04451 ABC04452
MLOC	MLOC_64555.1	3913	2e-24	883 - 942	100	60 / 60	minus	ABC04451 ABC04452
MLOC	MLOC_64555.2	3569	2e-24	862 - 921	100	60 / 60	minus	ABC04451 ABC04452
JLOC1	JLOC1_42402.2	3612	8e-25	2657 - 2716	100	60 / 60	plus
JLOC1	JLOC1_42402.1	3800	8e-25	2845 - 2904	100	60 / 60	plus
Harvest21	ABC04451	2450	3e-25	1552 - 1611	100	60 / 60	plus	ABC04451
Harvest35	U35_15794	1550	3e-25	652 - 711	100	60 / 60	plus

Contig Sequence (1550 bp)

>U35_15794 1550 Hv_44K_v2
GGATAACAAAAACCGTATGATGAAGAGAACTGAGTCTTCTGCTCCCATCTTCAACATGGA
TGATATAGAAGAGGGAATAGAAGGTTATGAGGATGAAAGGTCCATGCTTATGTCCCAGAA
GAGATTGGAGAAACGATTTGGTCAGTCTCCTATATTTACTGCATCCACCTTTATGACTCA
AGGAGGCATACCACCTTCAACGAACCCAGCTTCCCTACTAAAGGAAGCCATCCATGTCAT
CAGCTGTGGATATGAGGACAAAACCGAATGGGGAAAAGAGATTGGCTGGATCTATGGTTC
AGTTACTGAAGATATTCTTACTGGGTTTAAAATGCACGCAAGAGGTTGGATATCAATCTA
CTGCATGCCACCACGACCTTGTTTCAAGGGTTCTGCGCCAATCAATCTCTCTGACCGTCT
CAATCAAGTTCTCCGGTGGGCTCTTGGGTCAGTTGAAATTCTGTTTAGCAGACATTGTCC
TATCTGGTACAATTACGGTGGGCGGTTGAAACTTCTGGAGAGGATGGCTTACATCAACAC
CATTGTTTATCCAATAACATCCCTTCCACTTATCGCCTATTGTGTGCTTCCTGCTATCTG
TCTCCTCACCAACAAATTTATCATTCCCGAGATCAGTAACTATGCTGGGATGTTCTTTAT
TCTTATGTTTGCCTCCATCTTTGCCACGGGTATATTGGAGCTGCGATGGAGTGGTGTCGG
CATCGAGGACTGGTGGAGAAACGAGCAGTTCTGGGTTATTGGTGGCACATCTGCCCATCT
TTTCGCAGTGTTCCAGGGTCTGCTGAAGGTGTTGGCCGGGATTGACACCAACTTCACGGT
TACCTCGAAGGCAAACGACGAGGATGGCGATTTTGCTGAGTTATACGTGTTCAAGTGGAC
CAGTCTCCTCATTCCTCCGACCACCGTCCTTGTGATTAACCTGGTGGGCATGGTGGCAGG
CATATCATATGCCATCAACAGCGGTTACCAGTCTTGGGGTCCACTCTTCGGAAAGCTCTT
CTTCTCAATCTGGGTGATCCTCCATCTCTACCCCTTCCTCAAGGGTCTCATGGGGAAGCA
GAACCGCACGCCAACCATCGTCATTGTTTGGTCCATCCTCCTAGCCTCCATCTTCTCCCT
CCTGTGGGTGAAGATCGACCCTTTCATATCCGATACCCAGAAAGCCGTCGCCATGGGGCA
GTGTGGCGTCAACTGCTGATCGGCGCCGAAGAGTATCTGCCCCCCTCGTGTAAATACCGG
AGGGGGTTGGATGGGATTTTGTTGTTGTAGATGAAGACGGAGTTTTATGTAAGTTATTAT
TGCCCCTTCGTGCTGAGAAGCACAAACCGTGAAGCCTACGAAACCTGCAGCGTACATTGT
GATTTTTTTCTCCTTTTCTTTTCATCTGTGATACCTGTTGTTTCTTCTTAGAGTATATTA
TGTCAGAACGTATCTATAGTTCTATACACACTATGACACCAACTATTTATATAAGGCAGC
TGTTGCATCAAAAAAAAAAAAAAAAAAGTGTGAGAGGTGCCATGGTATAT

Homology of Contig U35_15794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g08370.1	1077	protein\|CESA1 - cellulose synthase, expressed
Brachypodium v1_2	Bradi2g34240.1	1079
Arabidopsis v10	AT4G32410.1	1081	\| Symbols: CESA1, RSW1, AtCESA1 \| cellulose synthase 1 \| chr4:15641009-15646388 REVERSE LENGTH=1081