barSeed - Barley Seed Development Database

Probe CUST_29494_PI390587928

Source Contig U35_50168

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29494_PI390587928	Hv_44K_v2	ATCTACAAGAAGAAAATGGATGATGCAACCAAGATCTGGCTAGATGCAAAAGCCCCTATC	548	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27961.1	799	2e-24	118 - 177	100	60 / 60	minus	ABC12682
JLOC1	JLOC1_18814.1	803	8e-25	624 - 683	100	60 / 60	plus
Harvest21	ABC52208	608	3e-25	549 - 608	100	60 / 60	plus
Harvest35	U35_50168	608	3e-25	549 - 608	100	60 / 60	plus

Contig Sequence (608 bp)

>U35_50168 608 Hv_44K_v2
TCGGGGCCTTCGTGAAGCGCGGCGAGGAGTCGGGGCACGTCCGCCTCTCCCTCCGCTGCC
AGTCACAACAGGCCAGCGACATCCACATCACCCGCAAGATCGATACCAACAATAAGTCTG
AGTGGCTACTCGACGGCGCCACTGTCCCCAAGAAGGATATCATCGACGTCATCAAGAAGT
TCAACATCCAAATCAACAACCTCACTCAGTTCTTGCCGCAAGATCGAGTGTGTGAGTTCG
CAAAGCTCACCCCCATCCAGCTGCTAGAAGAGACCGAGAAGGCCGTGGGCGATCCCAACT
TACCTGTTCAGCATCGCCAGCTTATAGAACGGAGCAGGGAGCTCAGGAATATTGAAGTGG
CTGTAAAGCAAAAGGAGCAGACCTTGAACAACCTCAAGGCCCTCAACGCCGAACAAGAAA
AAGATGTCCAACGTGTCCGCCAAAGAGATAAGCTCCTCAAGAAGGCTGAGCTCATGAAGA
AGAAGCTCCCATGGCTCAAATATGATGCCAAGAAGTTGGAATTCAAGAACGTGCTGGAGG
AGGAGAAAATCTACAAGAAGAAAATGGATGATGCAACCAAGATCTGGCTAGATGCAAAAG
CCCCTATC

Homology of Contig U35_50168 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g51790.2	1041	7e-83	protein\|RecF/RecN/SMC N terminal domain containing protein, expressed
Brachypodium v1_2	Bradi2g14160.1	1086	1e-83
Arabidopsis v10	AT5G15920.1	1053	6e-66	\| Symbols: SMC5 \| structural maintenance of chromosomes 5 \| chr5:5196210-5199559 FORWARD LENGTH=1053