barSeed - Barley Seed Development Database

Probe CUST_29458_PI390587928

Source Contig U35_19486

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29458_PI390587928	Hv_44K_v2	AAGGTATGCACACTTCATGGACTGCCCCACATTTGGAGATTTGCAATTTTAGCAACGGAT	999	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.077	3.806	1.396	0.572	0.492	0.429
Raw	89.150	79.976	28.383	17.453	4.527	3.811

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_284.1	2420	2e-24	2355 - 2414	100	60 / 60	plus	ABC06707 ABC12899 ABC12900
JLOC1	JLOC1_191.1	2898	8e-25	2290 - 2349	100	60 / 60	plus
Harvest21	ABC12900	670	3e-25	301 - 360	100	60 / 60	minus	ABC12900
Harvest21	ABC12899	1052	3e-25	890 - 949	100	60 / 60	plus	ABC12899
Harvest35	U35_19486	1162	3e-25	1000 - 1059	100	60 / 60	plus
Harvest35	U35_19485	670	3e-25	311 - 370	100	60 / 60	plus

Contig Sequence (1162 bp)

>U35_19486 1162 Hv_44K_v2
GGCCTCACCGTCGTGGATCGGCACCCGGACACCAAGATCCCGTGGGCCATCGCCTTGTGC
ATTGTGTCCGTCTTGGCCTACGTGTCCTTCTTCTCCACCGGCCTCGGCCCCCTGACGAGC
GTGTACACCTCGGAGGTCTTCCCGCTGCGGGTGCGCGCGCTGGGCTTCGCGCTCGGCGCG
TCATGCAACCGCGTGACCAGCGCGGCGGTCTCCATGTCCTTCCTGTCCTTGTCCAAGGCC
ATCACCATCGGCGGCAGCTTCTTCCTGTACGCCGGCATCGCGGCGCTCGGATGGATTTTC
TTCTTCACCTTCATTCCGGAGACGCGTGGCCTGCCGCTGGAGGAGATCGGGAAGCTTTTC
GGCATGAAGGACAGGGTCGTCGAAGAAGACACCGCCACGAAAGACAAGGTGAAAGTAGTG
GAGATGAAGGAAAACGCTTCTCATCTGTAGTCTGAAGGTGCGCTCATGCCAGGCTACTCG
AAGCCCGTCGATACGATTGAAAAATTGAAGCTCCAAATTTCATCTCGTATTAATAATAAT
AAAAAAACTGATTCCTTCATATCCTCACGCGCAATCCCCTCCCCCAATCTCTCGCCATCG
AATCGGCCATTAATCGTTGGCTCTGCTGAGCTCTGCTTCCCACCTCTCTCGCCTCGCCGC
CAGCTCGCGCTCACCAGATCCAGTGCGCCGCCATCGTCTAATCGAAACTCCACCAGCCAA
CGACAACAGTTCCACCTCACCAGCCAGCTTCATCCGACTCGCACCTCCAACTCAATCCCC
CTCGCATCGGTGGACCGCACCACCCACCTTCGTCCTTCGCTCCTCCCCGCAGAGCAGCAC
GGCTACGCCCCAGTCCACTCCACCAATGCTGTCCCCGTGCGATTCTGTGGTGTTTTCTCA
GTCGCTAGGCTCCCCCATCTATTGAATTAGATGCATCCCCATCGATTGATTCGGCCGGCT
GGAGAACATTATTTCTGAAGGAAGGCATCTCCAAAGCAAAAGGTATGCACACTTCATGGA
CTGCCCCACATTTGGAGATTTGCAATTTTAGCAACGGATTGTGTGTGTGTGTGTGTGTGT
CTTTTCGCCAAAAAAAAGGATTGTTGTTGTGTAATTCATGTGTTTTTATTTCATGTTTGT
GTAGATTTAAAAAAAAAAAAAA

Homology of Contig U35_19486 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g39350.1	578	1e-54	protein\|transporter family protein, putative, expressed
Brachypodium v1_2	Bradi1g23440.1	515	1e-67
Arabidopsis v10	None