barSeed - Barley Seed Development Database

Probe CUST_29328_PI390587928

Source Contig U35_16292

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29328_PI390587928	Hv_44K_v2	TATTCTCCAACTGATCTCTATAGTGACTAAGAAGACATTCCTCTTTTGGTAGTCAGTTAT	2101	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9931.1	5648	2e-24	5471 - 5530	100	60 / 60	plus	ABC05326 ABC07192
MLOC	AK369309	5953	7e-23	5881 - 5940	98	59 / 60	plus	ABC05326 ABC07192
JLOC1	JLOC1_6453.1	5671	8e-25	5472 - 5531	100	60 / 60	plus
Harvest21	ABC05326	2185	3e-25	2102 - 2161	100	60 / 60	plus	ABC05326
Harvest35	U35_16292	2181	3e-25	2102 - 2161	100	60 / 60	plus

Contig Sequence (2181 bp)

>U35_16292 2181 Hv_44K_v2
TGATGAGGATGATGAGGAAAGGTTGGGTGGTTCTGATTTACCCAATGATGGAAGCCGTCT
CTGGAGTGATATGTTCACTATAACATATCAAAAGGCTGATAATGAAGTGGATAGGGAATC
AACCAGAGGTTCATCTTTAGTGCTGAAATCGTCCAAATCAGATTTTTGCCGAGCTACATC
TCAAGAACAATGCATTTCTCTTCTTGATAGCATTTTGCAAGGAGAACTTCCTTGTGATAT
TGAGAAATCGACCCAAACTTACAATATCTTAGCACTGTTGCGTGTATTGGAGGGATTAAA
TCAGCTATCTCCTCGTCTGAGACTACAGGCAACCTGTGATGATTTTATAGAGGGAAAAGT
TGGTACCCTGGATGGGTTATATGGCACCGGAGCTAAGGTACCCTCAGAGGAGTTTATCAG
CAGTAAGTTGACACCAAAGCTTGCTCGGCAAATTCAGGATGTTCTTGCACTCTGTAGTGG
TAGTTTACCTTCTTGGTGTTATCAGATGACCAAAGCTTGCCCATTTCTGTTCCCTTTTGA
AACAAGAAGACAGCACTTCTACTCCACAGCTTTTGGGTTATCTAGGGCATTGAACCGTCT
TCAGCAACAACAGGGGGATAATAATAACTCTGCGACTGAAAGAGAAGTCCGGATTGGTAG
ATTGCAACGTCAGAAAGTTCGTGTTTCTCGTAACCGGATCCTGGATTCTGCTGCCAAAGT
AATGGAGATGTTCTCCAATCAGAAGGCTGTTCTTGAAGTTGAATACTTTGGTGAAGTTGG
AACTGGACTTGGTCCAACTTTGGAATTCTATACCCTCTTAAGTCATGACCTGCAAAGGAT
TGGCTTAGGATTATGGAGATCTGATTCTGATTCTTTAGAAGCTAAAAAACATGATTCGAT
TTCACCTGCTGATAGCAGGAACTTGATACAAGCACCTCTTGGCTTGTTCCCTCGGCCTTG
GCCACCTAGTACTGCTTCTTCAGAGGGTAGTAAATTCTTCAAAGTTGTTGAGTATTTCCG
CTTGGTTGGTCGAATCATGGCAAAAGCATTGCAAGATGGAAGGCTTCTTGACTTGCCTTT
GTCAACAGCATTTTATAAGCTTCTACTTGGACAAGAACTTGATTTGTATGACATACTATC
TTTTGATGCCGAGTTCGGTAAAATACTGCAAGAGTTGCAAGTTCTTGTTGAGCGCAAGCG
ATTTCTGGAGTCCTGCTCTAATTATAGTCAACAAATAGAAGATTTGAGCTTCCGTGGTGC
TCCTATTGAAGACCTATGCTTAGATTTTACTCTTCCGGGCTATCCGGATTTTGTTCTGAA
GGAAGGTGAAGAAAATACAGTGGTCTGCATTTACAACTTAGAAGAGTACATTTCGTTGGT
AGTGGAGGCTACACTAAAGACTGGAATAATACGTCAAGTAGAAGCATTCAAAGCTGGATT
TAATCAGGTATTTGACATATCATCACTACAAATATTTTCTCCTCAAGAGCTTGACTATCT
CATTTGTGGTCGACGGGAACTTTGGGAGCCGGAGACACTGGTCGAGCATATAAAGTTTGA
TCATGGTTATACCTCGAAGAGTCCAGCAATTGTCAATCTACTTGAGATCATGACGGAATT
TACTCCGGAGCAACAACATGCTTTCTGCCAGTTTGTGACTGGTGCTCCTCGGCTTCCACC
TGGTGGCTTAGCCTCCCTAAATCCGAAGCTGACTATCGTTAGGAAGCACTCCTCGACTGC
GACGAATACTTCAAATGCAGCTGGAGCAGCAGAGTCTGCTGATGATGATCTGCCTAGCGT
CATGACTTGTGCCAACTATCTTAAACTTCCGCCATACTCGACAAAGGAAGTTATGCACAA
GAAGCTGCTTTATGCTATCAACGAAGGCCAGGGGTCGTTTGATCTTTCATAGTGGGTTCA
AAACTAACATACAGATGTTGGTGCACATGTAAATGCGCACCAGTTTTTATTCAGTTAGTT
TGTTCATTGTCGTCATGTATAACATAGGCTTTAAGTCGTTTCTTTTGTGAAAGGTTTAGA
GCCTGGATCTTGTGGTGCCAGTGCTTATAACATTCTCTCTTCATTCCTGGGCACTTGTAT
ATATTCTCCAACTGATCTCTATAGTGACTAAGAAGACATTCCTCTTTTGGTAGTCAGTTA
TAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16292 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g01170.1	820	protein\|HECT-domain domain containing protein, expressed
Brachypodium v1_2	Bradi5g04567.1	1797
Arabidopsis v10	AT4G38600.1	1888	\| Symbols: KAK, UPL3 \| HEAT repeat ;HECT-domain (ubiquitin-transferase) \| chr4:18041503-18049292 REVERSE LENGTH=1888