barSeed - Barley Seed Development Database

Probe CUST_29326_PI390587928

Source Contig U35_16293

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29326_PI390587928	Hv_44K_v2	CCATTTGCTACCGAATGAAATAATGGTTGAATGCAGTCGTTGGAAATGTCGGCATTTTTT	1632	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37645.1	1510	2e-24	17 - 76	100	60 / 60	minus	ABC05214
JLOC1	JLOC1_24388.2	1640	8e-25	1423 - 1482	100	60 / 60	plus
JLOC1	JLOC1_24388.1	2134	8e-25	1917 - 1976	100	60 / 60	plus
Harvest21	ABC05214	1695	3e-25	1623 - 1682	100	60 / 60	plus	ABC05214
Harvest35	U35_16293	1715	3e-25	1633 - 1692	100	60 / 60	plus

Contig Sequence (1715 bp)

>U35_16293 1715 Hv_44K_v2
CTCTCTCCCTCTGTATCCTGCACACACCGCCACCGATCACTCGCCGGAGCCCCTCCCCCA
ATGGCCGCCGCCGCCGCCGCGATCGCGTGATGGCCGACCCAGCCGCTCGCCGAAGATGGA
CGAAGCCGGAAGGGCCTCCGCTCCCGCAGTGGTGACGGTCACGGCCTCCGCCGCCGCCCC
CTCGCCTCCTCCTCCCCCGCCCCCCGCCACGGCCGCCGCCGCCGCCGCCGACCCGCCATC
GCCCGACCCGGACGCCCTCTATGAAGAGGGAATGTGGCAGCAGATGACCATGAACAGCGG
TGTCACTATGCAATCTGGGCCATATCCTGTGCGGCCAGGGGAGCCGGACTGCACCTACTA
CCTCAGGACTGGATTGTGCAGGTTCGGCATGAGCTGCAGGTTCAATCACCCTCAGGACAG
GAATACGGCTATTGCCTCTGCCAGAATGAAAGGAGAATATCCTGAGAGGGTGGGACAGCC
TGAATGTCAGTACTATCTGAAGACTGGAACATGCAAGTTTGGGCCTACGTGCAAATTCCA
TCACCCTAGAGAAAAGGCTGGAATCGCAGGAATGGTGCAGCTAAATGCATTGGGATATCC
ACTTCGACCGAATGAAAGGGAGTGTGCATACTACTTAAAAACGGGACAGTGTAAATATGG
GAATACATGTAAATTTAACCATCCAGAAATTTTCAATGCGGTGGCTTCTTCACGTGGTTC
CCCTATTTATCCTCCTGTACATACCTCTGGAAGCACTGGTCCACATTCCTATACTGGAAC
AATGGCAAGTTGGACTTATCCAAGAGGTTCTTTCATTCCAAGCCCTAGATGGCAAAGTCC
TTCAAACTATACACCGATGATTGTACCGCAGGGTCTTGTTCAAGTACCAAGCTGGAACTC
ATATCCTGGGCAAATGGTACCTGTTTCATCTCCTGAGAGTCGACTACAGTCTCCAGGAGC
TCAACAATACTATGGAACTTCTCGACAAGGTGAAGGCAGTGCAGGAAATCAGGGAATGCA
ATCAACCTACAGATCCAGTTCATTTCCTGTACCTCAGTATGCACTGCAGAGAGAGAATGT
ATTTCCTGAGAGACCTGATCAACCGGAATGCATATACTACATAAAGACTGGAGACTGTAA
ATTTGGTGCAGTTTGCAAATTCCATCATCCCCGTGTGCGTTCACAGCCTCCCCCAGACTG
TATCTTGAGCCCAATGGGTCTTCCATTACGCCCAGGGGAGGAGCTCTGCAAGTTCTACTC
TCGCTATGGCATCTGCAAGTTTGGCGTAAACTGCAAGTTCGACCATCCGATGGCGGCCCC
GATGGGGGTCTACGCGTACGGCTACTCCGCGTCGGCGTCGCCCAACGCGCCCATGGCTCG
CCGTCTCCTGGAGTCGCCCTCCGGGTCTGCGTACGCGTCCTAAGGCTCCCCGGCAATTTG
ACCTTGATTGATCTCGATGATGATGTATAAAAAGCCATCGCGCGCCGTCCGTCCTCGGTC
GCGCCCCGCGAATGTTCTCTCCCCCTAACTCCCCCGGAATCAAGTTCTGTAAAAATCGAG
TTTGCTACCAGAGATGTACAGTTATTTTTGTTAATGCGGGTCAAAAAATGGATGGATGGA
TGGATGGAGAAGCCATTTGCTACCGAATGAAATAATGGTTGAATGCAGTCGTTGGAAATG
TCGGCATTTTTTTTCGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16293 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g68860.1	440	0.0	protein\|zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Brachypodium v1_2	Bradi2g58770.1	443	0.0
Arabidopsis v10	AT3G02830.1	397	8e-151	\| Symbols: ZFN1 \| zinc finger protein 1 \| chr3:614075-615916 FORWARD LENGTH=397