barSeed - Barley Seed Development Database

Probe CUST_29301_PI390587928

Source Contig U35_42569

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29301_PI390587928	Hv_44K_v2	CAATGATGATGTACTGCTTCAAAATTTGTTCCGGTACTCTCCAAATTTATATGACCCAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_895.1	270	6e-24	144 - 202	100	59 / 59	minus	ABC16364 ABC38305
MLOC	MLOC_31979.1	464	3e-22	133 - 191	98	58 / 59	plus	ABC16364 ABC38305
JLOC1	JLOC1_20934.1	463	1e-22	128 - 186	98	58 / 59	plus
Harvest21	ABC38305	558	3e-25	15 - 74	100	60 / 60	minus	ABC38305
Harvest21	ABC16364	1043	1e-24	684 - 742	100	59 / 59	plus	ABC16364
Harvest35	U35_42569	558	3e-25	15 - 74	100	60 / 60	minus
Harvest35	U35_21165	1043	1e-24	684 - 742	100	59 / 59	plus

Contig Sequence (558 bp)

>U35_42569 558 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGGTCATATAAATTTGGAGAGTACCGGAACAAATTTTGAAGCA
GTACATCATCATTGATAAAACACCGTGAACAAAATGAAGCTGATACGGAAAACCTCCTGA
CTGTGCGAACTGGGGCATCAGGCCAAGGCTAAAGGTGTTGGGAGCGGCGTCCCTGAGCAC
CAACAATCCCTTCCTTGTCCCTTCGAAATGGTGGTTATTCATTTGGACCAATTACATCTC
AAGCTGCAGGGGCAACAATATCTCCATGGCCTTGGAGCCCACCATCTCGCCACGTTCCTT
GCCACGGAGGAGGATCGCCTGCATCCTGAGTTGCGCAACGTGGCAAGCGGGTGATCTGCA
CCGCAGAGGAGTTGGACTCGTCGGCCTGCAAATGCAGCGGAGGAGGCTAGCATACACATC
CTGGGACGCTTATAGAATGAAATGGAGCTACGCCTGGTTGTTTATTCTGCAGATGGTTGG
CAGGACGACCTTGGCACCCTTTCCCATGAGGAACTTGATGGACGGCATANAGGCGCGGAT
GCGCTTGTCGTCATTACA

Homology of Contig U35_42569 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None