barSeed - Barley Seed Development Database

Probe CUST_292_PI390587928

Source Contig U35_20057

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_292_PI390587928	Hv_44K_v2	ACTTTGTTGTTGTTGTTGGCCACTGTATGTATGAATGGATTGGCGTTGCGTGTCAAAAAA	594	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33978.1	2816	9e-22	5 - 59	100	55 / 55	minus	ABC13590 ABC18488
MLOC	AK364215	3141	3e-21	3088 - 3141	100	54 / 54	plus	ABC13590 ABC18488
JLOC1	JLOC1_21944.1	2827	5e-22	2761 - 2815	100	55 / 55	plus
Harvest21	ABC13590	665	3e-25	12 - 71	100	60 / 60	minus	ABC13590
Harvest35	U35_20057	665	3e-25	595 - 654	100	60 / 60	plus

Contig Sequence (665 bp)

>U35_20057 665 Hv_44K_v2
AGGTTTCACACCGGGTCGTAACTCCTTTGCACGGAGTCACAGAGCGCGAACGCATCCCTG
AAAGCGCTGTGGCAGCACTCGGATTCAATCATGTGCTGTTCCCTGAAGGCAGCTCCTGTG
TTCACCTTCGCCAACCAGGCCGGCCTGGACATGCTGGAGACGACGCTGATTGCGCTCCAG
GACATCTCGCTGGAGAAGATCCTCGACGACGATGGCCGCAAGGCGCTGTGCTCCGAGTTC
CCCAAAATCATGCAGCAGGGTTTCGCGTACCTCCCAGGCGGCGTGTGCGTGTCGAGCATG
GGGCGGCCGGTGTCGTACGAGCAGGCGGTGGCGTGGAAGGTGCTGGGCGACGACGACGCG
CCGCACTGCCTCGCCTTCATGTTCGTCAACTGGTCCTTCGTGTAGCAGCTTGTAGCCAGC
ATTAGAAGTGATGAGCCACCTCGGGCTACCGTTCGTTTGCAAACTGCGTCTCCGAAAAAC
CATTGTGTGCCGGCGCTCGGTCGCTTTTGTCTTGTGTCAAGATTCAAGAACCCTTTCAGT
TTTATCATCATCATCATCCATTCCATCACCCTGTGGAACAGACGCACCTACAGTACTTTG
TTGTTGTTGTTGGCCACTGTATGTATGAATGGATTGGCGTTGCGTGTCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_20057 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43930.2	860	7e-79	protein\|START domain containing protein, expressed
Brachypodium v1_2	Bradi1g13910.1	862	4e-82
Arabidopsis v10	AT1G52150.2	837	7e-59	\| Symbols: ATHB-15, ATHB15, CNA, ICU4 \| Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein \| chr1:19409913-19413961 REVERSE LENGTH=837