- Probe CUST_29272_PI390587928
- Source Contig U35_28293
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29272_PI390587928 | Hv_44K_v2 | TATCTTCTCAATGACCCTGCTGCATCAGAAGCAAAAACAAAGATGGGATTAGGAGATCTT | 568 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.201 | 0.334 | 1.092 | 2.182 | 1.035 | 1.271 |
| Raw | 95.073 | 244.647 | 711.128 | 2269.548 | 371.967 | 493.981 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_15522.5 | 1154 | 2e-24 | 606 - 665 | 100 | 60 / 60 | plus | ABC09645 |
| MLOC | MLOC_15522.1 | 1564 | 2e-24 | 1018 - 1077 | 100 | 60 / 60 | plus | ABC09645 |
| MLOC | MLOC_15522.2 | 1569 | 2e-24 | 1023 - 1082 | 100 | 60 / 60 | plus | ABC09645 |
| JLOC1 | JLOC1_10652.4 | 1187 | 8e-25 | 530 - 589 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10652.3 | 1838 | 8e-25 | 1181 - 1240 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10652.2 | 1298 | 8e-25 | 641 - 700 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10652.1 | 1293 | 8e-25 | 636 - 695 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09645 | 1136 | 3e-25 | 572 - 631 | 100 | 60 / 60 | minus | ABC09645 |
| Harvest21 | ABC09644 | 604 | 3e-25 | 542 - 601 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28293 | 631 | 3e-25 | 569 - 628 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_4458 | 1247 | 3e-25 | 617 - 676 | 100 | 60 / 60 | plus |
Contig Sequence (631 bp)
>U35_28293 631 Hv_44K_v2 GCAGGCAATTTTGCACGAGGCAGCGGCGAAGAAGAAAAATATCGCGCCTCCCCCCGCCGC CGATCAGCGCCTCCGGCTCTGGATCCCCGTGCGGATCCGCAGCACCGACCTCCGAGTCGA GCCCATGCAAGGTGCTGCTACTGTTTGGTCATTTGGTGTGTATCCACTACCAGTTGTGGG CACTGAGTGAAGTGAAGTGCTGGCATGGGGGGCGTGTTTGGACGCCACGACGCCGGCAGG CAGGAGCTCCCACGGTCTGAAGCTAGAGTCGAAGATGGTGGAGTCCATGAAGCAGAGAGC GTAGGATGGAACTTCGGCCAAGTCGTTCAACAGTATTATCATGAAGTTCGCGAAAATAGA CAAGGGCTTGAGAAAATGCAAGACTATCTTTCAGCAATTCGATGAAGATTCCAATGGTGA AATTGATAAAGAAGAGCTCAAGAATTGCTTTCAGAAGCTGGAAATCTCATTCACAGAGGA GGAGATAAGTGATCTCTTTGAAGCTTGCGACATAAATGAAGATATGGGCATGAAGTACAA TGAGTTCATTGTCTTTCTGTGCCTTGTTTATCTTCTCAATGACCCTGCTGCATCAGAAGC AAAAACAAAGATGGGATTAGGAGATCTTGAG
Homology of Contig U35_28293 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g40720.1 | 225 | 4e-72 | protein|EF hand family protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g36230.1 | 225 | 3e-74 | |
| Arabidopsis v10 | None |