barSeed - Barley Seed Development Database

Probe CUST_29260_PI390587928

Source Contig U35_42593

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29260_PI390587928	Hv_44K_v2	GGTCTCTCCCTGTGTGTCTTTGTGAGCATCTTCAGAAAGAGCTCCTATTATTATAAAAAA	59	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.275	7.129	1.661	0.577	0.136	0.186
Raw	1993.180	2634.068	492.892	291.832	22.069	33.900

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250623.1	752	7e-23	649 - 709	98	60 / 61	plus	ABC03214 ABC03215 ABC03216 ABC03217 ABC06933 ABC38880
MLOC	MLOC_60968.1	1052	7e-23	82 - 142	98	60 / 61	minus	ABC03214 ABC03215 ABC03216 ABC03217 ABC06933 ABC38880
JLOC1	JLOC1_39792.1	872	4e-23	732 - 792	98	60 / 61	plus
Harvest21	ABC03217	651	1e-23	532 - 592	98	60 / 61	plus	ABC03217
Harvest21	ABC03214	615	6e-22	527 - 587	97	59 / 61	plus	ABC03214
Harvest35	U35_42593	579	3e-25	60 - 119	100	60 / 60	minus
Harvest35	U35_15461	622	1e-23	532 - 592	98	60 / 61	plus
Harvest35	U35_15459	609	1e-23	521 - 581	98	60 / 61	plus

Contig Sequence (579 bp)

>U35_42593 579 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAAGACATACACGATACCTCCCGTGCAGCATGAGAGAATCTTT
TTTTTATAATAATAGGAGCTCTTTCTGAAGATGCTCACAAAGACACACAGGGAGAGACCA
TACTGAACAACGACCTTGTTACATTATTACCACACAAAGCATCGACAAACACGACGTGCG
GCGAACACAAACTACCGAGACCCCGGTTATTGATTTCCTAACTTTATTACGGGGCAACAG
TCACACGAACTGCAGGCAGCTACTGACGAACAGATCTAGCGAACGGCACTGACCAACAGC
AGCAACAGATCTAGCAGACCCTCTTGCAGAAGCACTTGCGGGCGAGGTTCTGGGTGTGGC
ACTGGCCGTCGGGGAAGTTCTCGGTGCGGCAGACGGCGGCGCAGTTGCTGCTGCTGAGGC
ACGTGCCCTTGAACTTGTGGCTCTGCGACAGGCAGTCCCGCGCCTCCGCCACCTTCACCG
TCGTCGCCCCCATCTCTGTGGCGACGAGGAGGAGCAGCAGCAGGAGGGCGGACCCGGCCA
TGCGACGAGACTGCGCCATGGATCTGCTCGGCTTCACCC

Homology of Contig U35_42593 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None