barSeed - Barley Seed Development Database

Probe CUST_2925_PI390587928

Source Contig U35_480

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2925_PI390587928	Hv_44K_v2	CCGCTTATTCTTACCTACTAGATGGATTAGACTGATGATAATAAAGTTCAATTCTTCGAG	1104	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361278	1150	2e-24	1090 - 1149	100	60 / 60	plus	ABC02951 ABC02952 ABC02957 ABC02958
MLOC	MLOC_65765.1	1374	3e-21	1291 - 1350	97	58 / 60	plus	ABC02951 ABC02952 ABC02957 ABC02958
JLOC1	JLOC1_43296.1	1535	2e-21	1265 - 1324	97	58 / 60	plus
Harvest21	ABC02957	877	2e-21	800 - 855	98	55 / 56	plus	ABC02957
Harvest35	U35_480	1184	3e-25	1105 - 1164	100	60 / 60	plus

Contig Sequence (1184 bp)

>U35_480 1184 Hv_44K_v2
TCGAGCACTGTTGGCCAACCACACTGGAGCAGAGCCAACGGCAGTATCCGGCCCGGTTCC
ACTTCCACTCCACTTGCCTCCACATTTCCTCCTCCTTCCCAAGAAGCAGAGCCGAGCAGA
GCAGAGCAGAGCAGGGTGTCATGGCGATGGCGCCGAGGGCTGTGTCCTTGTCGGTCGCCG
TGGTGGTGGCGCTCCTGGCAACGGCGGACTCGTGGCTGTACGAGGAGTTCACCACGGACG
GCAACGTGCGCGCGGACTACAACGCGCAGGGGCAGCAGGTGGCGTCGCTCATCCTCACAC
AACAGTCCGGCGGCGGCGCCTTCGGCTCCCGGCGCAAGTACCTCTACGGCGAGTTCAGCA
TCCAGATGAAGCTCGTCCCCGGCAACTCCGCCGGCACCGTCACCTCCTTCTACCTGTCGT
CTGGCGACGGCCCCGGGCACGACGAGATCGACATGGAGTTCATGGGCAACTCCACGGGGC
AGCCGGTGGTGCTCAACACCAACGTGTGGGCCAACGGCGACGGCAAGAAGGAGCACCAGT
TCGACCTCTGGTTCGACCCGGCCGCCGACTACCACACCTACACCATCATCTGGAACCACA
AGAACGTCATCTTCAAGGTGGACGACCTCTTCATCCGCAGCTTCACGCGCTACGCCGACC
TGCCCTACCCGGGCGCCAAGCCCATGTCCGTGCACGCCACGCTCTGGGACGGCAGCTACT
GGGCCACGCAGAAGGGCAAGGTCCCCGTCGACTGGTCCGGCGCGCCCTTCGTCGTCTCCT
ACCGCGGCTACTCCGCCGACGCGTGTGTGCCCAACGGCGACGGCCGCCCGCTCTCCTGCC
CCGCCGGCACCGGCCGCTGGATGGACCGCCAGCTCGACGACGCCGAGCGCGGCACCGTCG
CCTGGGCCAGGCGCGACTACATGCGCTACAACTACTGCGACGATGGCTGGCGATTCCCGC
AGGGCTTCCCCGCCGAGTGCTCCCGCGGCTGAACAACCGATTGACTTCACTCACGCCTTC
GTTAGTTCCCACGGATTGTTCGTTGTCCATTCATTTCTGGTTTCTTGGTTTTGTTGGTCT
ATTTGTTCTTGATTCCGTTAACTCCCGCTTATTCTTACCTACTAGATGGATTAGACTGAT
GATAATAAAGTTCAATTCTTCGAGTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_480 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g13920.1	291	5e-122	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi3g18590.1	281	2e-124
Arabidopsis v10	AT5G57550.1	284	3e-78	\| Symbols: XTR3, XTH25 \| xyloglucan endotransglucosylase/hydrolase 25 \| chr5:23305055-23306384 REVERSE LENGTH=284