barSeed - Barley Seed Development Database

Probe CUST_29257_PI390587928

Source Contig U35_42597

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29257_PI390587928	Hv_44K_v2	ATCTTGTGTGGTGCATTTTTGTTCATCTATGTCCTTTGGTAGAACCAAACAAGAGCTTTA	74	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377097	5160	2e-24	2891 - 2950	100	60 / 60	plus	ABC09103 ABC16473 ABC38348
MLOC	AK372923	4264	2e-24	4183 - 4242	100	60 / 60	plus	ABC25561 ABC38348
MLOC	MLOC_35470.4	2463	2e-24	2121 - 2180	100	60 / 60	minus	ABC09103 ABC38348
MLOC	MLOC_35470.2	2331	2e-24	1989 - 2048	100	60 / 60	minus	ABC09103 ABC38348
MLOC	MLOC_35470.1	2305	2e-24	1963 - 2022	100	60 / 60	minus	ABC09103 ABC38348
MLOC	MLOC_35470.3	1530	2e-24	1188 - 1247	100	60 / 60	minus	ABC09103 ABC38348
MLOC	MLOC_35470.5	2364	2e-24	2026 - 2085	100	60 / 60	minus	ABC09103 ABC38348
MLOC	MLOC_35470.6	2366	2e-24	2028 - 2087	100	60 / 60	minus	ABC09103 ABC38348
MLOC	MLOC_35470.11	1636	2e-24	1294 - 1353	100	60 / 60	minus	ABC09103 ABC38348
MLOC	MLOC_35470.7	2303	2e-24	1961 - 2020	100	60 / 60	minus	ABC09103 ABC38348
JLOC1	JLOC1_22892.7	1689	8e-25	284 - 343	100	60 / 60	plus
JLOC1	JLOC1_22892.6	1752	8e-25	284 - 343	100	60 / 60	plus
JLOC1	JLOC1_22892.5	2531	8e-25	284 - 343	100	60 / 60	plus
JLOC1	JLOC1_22892.4	2467	8e-25	283 - 342	100	60 / 60	plus
Harvest21	ABC38348	595	3e-25	75 - 134	100	60 / 60	minus	ABC38348
Harvest35	U35_42597	595	3e-25	75 - 134	100	60 / 60	minus

Contig Sequence (595 bp)

>U35_42597 595 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTGTGCAGAGCACTCTAATAAACGCAGTACAGGCAGATTAAAA
GATATCCATCTATATAAAGCTCTTGTTTGGTTCTACCAAAGGACATAGATGAACAAAAAT
GCACCACACAAGATTGACTTTGAAGAAATGACAAGAAAGATGTGCCCAACATAAGAACAA
CAAGACGCTGAAAAGTCTATAGTCTTCCTAAGCCACACAATTAATACTGCTGTCACTCGC
AGTTAAACTGCAAAACAATTGGCCAATTACCTGAAACATCTCGACGCCAAGGAAGTTCTT
CACATACGCGGACCAGCGTGCCATTGGAGCTGATGAACCTGAGAGAGTTGAGGTTGTACT
TCATGGACGTCCTATGCTTGGCAAGCACCACCATGACCAGTAGCATGCAGAAGATGTGCG
TTACATGGTGATACTGCACAACCTTCATGACAGAGTCCATCAACTGTTTAGTCAGAATAT
TGACCTTTGATCCACAATGTTCTTGTGTAAGTATTGACGAATAAGAGTTTCATAATGTAT
TTGAATTCCAAGAAAAAACAGAAACTGCCAATCAAAAAAATTATAACATAAATAA

Homology of Contig U35_42597 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None