barSeed - Barley Seed Development Database

Probe CUST_29223_PI390587928

Source Contig U35_29906

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29223_PI390587928	Hv_44K_v2	TTGAGATAAATACACTACCAGTTACTGAAGTTGAGGTCGAAGCACAATACGGTACCCGGG	120	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359905	1207	9e-22	1030 - 1087	98	57 / 58	minus	ABC18779 ABC29483
MLOC	MLOC_45142.1	702	9e-22	418 - 475	98	57 / 58	plus	ABC29483
MLOC	MLOC_45143.1	746	9e-22	462 - 519	98	57 / 58	plus	ABC29483
JLOC1	JLOC1_29300.1	543	5e-22	259 - 316	98	57 / 58	plus
Harvest21	ABC29483	200	3e-25	121 - 180	100	60 / 60	plus	ABC29483
Harvest35	U35_29906	200	3e-25	121 - 180	100	60 / 60	plus

Contig Sequence (200 bp)

>U35_29906 200 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTCCGAATTGTAGCATTCTTTGCAGGATATCATACAGAGGGAG
AATGCAATGAACAGAGGGGGTTCTCCTAAATCATTGCCACATCTCCATCATGGTTTAATG
TTGAGATAAATACACTACCAGTTACTGAAGTTGAGGTCGAAGCACAATACGGTACCCGGG
GCCTCGATCTCCTCTCCACC

Homology of Contig U35_29906 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None