barSeed - Barley Seed Development Database

Probe CUST_291_PI390587928

Source Contig U35_20058

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_291_PI390587928	Hv_44K_v2	ACTTGAGTGCAAGTACAATGAGACGACAACCTCACTTGACAAGGTGATGGAAGAGAAGGA	1034	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363414	2278	2e-24	1009 - 1068	100	60 / 60	plus	ABC12627 ABC21093
MLOC	MLOC_57689.3	1882	2e-24	736 - 795	100	60 / 60	minus	ABC12627 ABC21093
MLOC	MLOC_57689.1	1765	2e-24	738 - 797	100	60 / 60	minus	ABC12627 ABC21093
JLOC1	JLOC1_37423.1	2791	8e-25	980 - 1039	100	60 / 60	plus
Harvest21	ABC12627	1666	3e-25	1035 - 1094	100	60 / 60	plus	ABC12627
Harvest35	U35_20058	1666	3e-25	1035 - 1094	100	60 / 60	plus

Contig Sequence (1666 bp)

>U35_20058 1666 Hv_44K_v2
GGGCTGCAGGGAATACTCTCCTACTCCGCTTTGCCCCCCTCCCCCCTCCTTCCTGCTGCC
CTGCCCCGTCTACAGCGCCCTACAGCTACAGTTAGGCGGCAACTCGCCTCCGCCAACGCC
GCCGCCGAGGCAAGGTGAGCCCAAGCCCTCCGAATCGCTTCCTCATTCGTGGACCCACTC
CTCCTTCCCCTTCTTTCGAGCGACATTGGAGTGATCCTCGCCGCGCCTTAAAAACCCTAG
GTTTTTGGTGGCGGCGTCGTCCGTCAGCAGGCAGGTGGACGGCCCTCCATCTCCATGGAT
CCCGGCGACGCACCTGAACGGATTCCCAAGGAAAGGGGTTATCGGAGCAGAGACAGCCCA
CCTCGTCGTAACGCAACTGGAGCAGGCTCAGATGCTCATCGTCACTCAACTGGAGCAGGC
TCAGATGCTCATCGGCACGGGAGAGACAGGATGACCCACCGCGTCCCTGCCAAGCGCGTG
AAGGATGAGCTGCCCGAGTCGTCCGAGCCGCCGCCGCCGTCACGGCTCAAGACTGTGGTG
CCCCGTCCCGTTCAGGACAAAGACGAGCAATTCGTTTGGCCCTGGATGGGTGTGCTGGTC
AATGTGCCTACCGAGTGGAAAGGCGGCCGCCAGGTTGGGGAAAGTGGGAGCCGCTTGAAG
GAGCAGCTCTCGGGCTTTTGCCCACAGAAGGTGATTCCTTTGTGGAATCATAGAGGTCAC
ACGGGAAATGCGATTGTTGAGTTTGGAAAAGACTATGCTTGCTTCTGTAATGCGTTCAAG
TTTGAAAATCACTTTGAGGCAGAAGGATATGGCAAACGGGACTGGGAGACACGCAAGTAT
CGTGGGTCGGAGATGTATGGATGGGTTGCAAGGGCTGATGATCAAAGAACTCCGGGGCCA
ATTGGGGAGCATCTACAAAAAAATGGTGATCTGAAAACTGTGGCAGAGCTTGAGAATGAA
GGAACACGCAAAACTGACAAACTGGTAGCTAATTTAGCCATTCAAATTGAGGTAAAGGCC
AAGCATGTCCAAGAACTTGAGTGCAAGTACAATGAGACGACAACCTCACTTGACAAGGTG
ATGGAAGAGAAGGAGCAGGTCCTCCAGAGATACAATGATGAAATACACAAGATGCAGCAA
CTTGCTCGTAAGCATTCTCAGATGATCATCAATGAGAATCAGAGGCTCCGTTCAGAACTG
GAGTCCAAGATGCAGGATCTTGAATTAAAATCCAGGCAGCTTGATGAACTTGCTGTGCGT
AGTGACTCGGACAGAAGGAACCTTGAGAAAGAGAAGGAAAAGAACGAGATGAAAGCAAAA
TATCTTAAGATGGCAACATCGGAGCAACAGAGGGCGGATGAAAATGTGCTGAAGCTTGTG
GAAAAACACAAGAGGGAGAAACAAGCTGCTCTAAATGAGATTATCAAGTTAGAGCAGAAA
CTGGATGCCAAGCAGAAGCTTGAGTTAGAAATAAAACAGATGCAGGGAAAATTGGAAGTG
ATGAAGCACATGCCAGGTGTGGAAGACTCCGAATCAAAAAGGAAGATAGATGAACTTAGT
GCTGAGCTTCAAGACAAGTACGATGAAATGGATGCAATGGAATCGCTCCACCATACTCTG
CTTATGAAGGAAAGGATAAGCAATGATGAGTTGCAAGATGCTCGGA

Homology of Contig U35_20058 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g44230.2	557	0.0	protein\|transcription factor X1, putative, expressed
Brachypodium v1_2	Bradi2g43557.1	518	0.0
Arabidopsis v10	AT3G48670.1	647	2e-89	\| Symbols: IDN2, RDM12 \| XH/XS domain-containing protein \| chr3:18031240-18033615 FORWARD LENGTH=647