barSeed - Barley Seed Development Database

Probe CUST_29180_PI390587928

Source Contig U35_17951

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29180_PI390587928	Hv_44K_v2	TGAGTTGTAATGCCATTGCCAACTTTCTGAGGTGTCTTTTATGCCAATCCTCGGACACCA	1731	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251772.1	1834	2e-24	1752 - 1811	100	60 / 60	plus	ABC08470 ABC08472 ABC37012
MLOC	MLOC_72888.1	847	2e-24	22 - 81	100	60 / 60	minus	ABC08470 ABC08472 ABC37012
MLOC	MLOC_72888.2	1109	2e-24	22 - 81	100	60 / 60	minus	ABC08470 ABC08472 ABC37012
JLOC1	JLOC1_48505.5	1069	8e-25	749 - 808	100	60 / 60	plus
JLOC1	JLOC1_48505.4	1069	8e-25	749 - 808	100	60 / 60	plus
JLOC1	JLOC1_48505.3	1044	8e-25	724 - 783	100	60 / 60	plus
JLOC1	JLOC1_48505.2	1287	8e-25	967 - 1026	100	60 / 60	plus
JLOC1	JLOC1_48505.1	991	8e-25	671 - 730	100	60 / 60	plus
Harvest21	ABC08472	1034	3e-25	2 - 61	100	60 / 60	minus	ABC08472
Harvest35	U35_17954	1034	3e-25	974 - 1033	100	60 / 60	plus
Harvest35	U35_17951	1793	3e-25	1732 - 1791	100	60 / 60	plus

Contig Sequence (1793 bp)

>U35_17951 1793 Hv_44K_v2
GCAGGGATCCCCGCTTATTCCCCGGGCCAGAACAACCCATCCAAGCTCCTGTCCGTTCCG
GCGACGGCGACGGCGACGGGCCGGCGGTTGCCTTCCTCCTCCTCCGTCGGCCAAGATCCA
CATCACCGCATCCTCCTCTTCTTTCATGTACTCGTCACATCACCGATCTCACACGCAATG
GATGGGCAAAGCAGAAAGCACAGGATTTTGATGGTGTCTGACTTTTTCTTCCCAAACTTT
GGCGGTGTGGAAAGCCACATCTATTATCTATCGCAGTGCCTCCTTAAGCTTGGCCATAAG
GTTGTTGTCATGACACATGCATATGGAAAACGTTCTGGAGTACGATATGTTACTGGTGGC
TTGAAGGTTTATTATGTGCCGTGGAGGCCATTCCTGATGCAGAATACACTACCTACATTA
TTCATGACATTTCCAATCATAAGGACCATTCTTATTCGTGAGAGGATATCTGTTGTGCAT
GGACATCAGGCCTTTTCAACACTGTGCCACGAAGCGTTGATGCATGCTAGGACGATGGGG
TACAAAGTTGTCTTCACAGACCACTCGCTTTATGGTTTTGCTGATGTTGGGAGCATTCAC
ATGAATAAGGTGCTGCAGTTTACTCTTGCAGATATTGATCAGGCCATATGTGTGTCTCAC
ACAAGCAAAGAGAACACTGTCTTGAGGTCAGGGATATCCCCGGACAAAGTTTTCATGGTT
CCTAATGCAGTGGATACTGCAATGTTTACTCCCTCCAACCGCTTAAGCTGTGATGAAATC
ATTATTGTTGTGATAAGTAGATTGGTATATCGAAAAGGTGCTGACCTTCTTGTTGAAGTC
ATTCCAGAAGTATGCCGTCTATTTCCAAAGGTTCGCTTTATTGTTGGAGGTGATGGTCCA
AAACGAGTGCGACTTGAAGAGATGAGAGAGAAGTTCTCCCTTCAGGATAGAGTTGAGATG
TTAGGGGCTGTACCTCATGCTCAAGTACGATCTGTTCTGATATCTGGTCATATATTTCTT
AACAGTTCGCTTACAGAAGCATTTTGCATAGCCATTCTGGAAGCAGCAAGCTGTGGGCTT
TTGACTGTAAGCACTAGAGTCGGAGGGGTTCCAGAGGTTCTACCAGATGACATGATAGTA
CTTGCAGAACCAGATCCAGAAGATATGGTACGGGCTGTCAGGCAAGCTATCGACATACTG
CCTGGTATAGATCCCCAAATTATGCATCGCCGGATGAAAAAACTCTATAGTTGGGATGAT
GTTGCGAAAAGAACGGAGATCGTCTACGATCGTGCAATGCAGTCATCAAACACTAATTTG
CTAGATCATCTTCCCCGATACCTCACATGTGGAGCTTGGGCAGGCAAGCTGTTTTGCCTC
GTTATGATCATAAATTACCTTGCGTGGTGCCTTCTAGAATTCCTGCAGCCTGCTGAAGGT
ATTGAAGAAGTCCCGGATATAGGGTCACTACACATTCATTCGGATTCAGTAGATGACCAG
TGGAAGCGCAAGGAAATTGAACTGTTTTGCAACCATTGTGGCATGGATCATGTAGGAGGT
CGTGATGCCTAGTTTGGGCTAGCTGGCTCCCACTCTGGAATTTCTTTCGGTGTTTCCTGG
TCCTGCAGTGACTGCTTTGAGAACAGATCTTTGGCGAACCAGATAATTATGAAATCATTT
CCTCGCACCAAATACTGGAATTTACAGTCGTGTTGCATAAAGCTAATGGTGTGAGTTGTA
ATGCCATTGCCAACTTTCTGAGGTGTCTTTTATGCCAATCCTCGGACACCAGC

Homology of Contig U35_17951 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g16960.1	472	protein\|glycosyl transferase, group 1 domain containing protein, expressed
Brachypodium v1_2	Bradi1g32610.1	449
Arabidopsis v10	AT3G45100.1	447	\| Symbols: SETH2 \| UDP-Glycosyltransferase superfamily protein \| chr3:16504648-16506858 FORWARD LENGTH=447