barSeed - Barley Seed Development Database

Probe CUST_29178_PI390587928

Source Contig U35_17953

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29178_PI390587928	Hv_44K_v2	AACGAGATAACTATCAAACACATTAAGCATCGCTAGAATGATGGCCAGTCAGCTACGCCA	563	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368062	1872	2e-24	1624 - 1683	100	60 / 60	plus	ABC08470 ABC08472 ABC37012
MLOC	MLOC_67626.2	1481	2e-24	148 - 207	100	60 / 60	minus	ABC08470 ABC08472 ABC37012
MLOC	MLOC_67626.1	1602	2e-24	190 - 249	100	60 / 60	minus	ABC08470 ABC08472 ABC37012
JLOC1	JLOC1_44670.2	1648	8e-25	1262 - 1321	100	60 / 60	plus
JLOC1	JLOC1_44670.1	1617	8e-25	1231 - 1290	100	60 / 60	plus
Harvest21	ABC37012	544	1e-23	190 - 249	98	59 / 60	minus	ABC37012
Harvest35	U35_17953	812	3e-25	564 - 623	100	60 / 60	plus

Contig Sequence (812 bp)

>U35_17953 812 Hv_44K_v2
GAGGTAGAGTTGGAGGGGTTCCAGAGGTTCTACCAGATGACATGATAGTACTTGCAGAAC
CAGATCCAGAAGATATGGTACGGGCCGTTAGGCAAGCTATTGACATACTTCCTGGTATTG
ATCCTCAAATTATGCATCGCCGGATGAAAAAACTCTACAGTTGGGATGATGTGGCCAAAA
GAACAGAGATTGTCTACGATCGTGCAATGCAGTCATCAAACACTAATTTGCTAAATCGTC
TTCCCCGATACCTTACATGTGGAGCTTGGGCAGGCAAACTGTTTTGCCTCGTTATGATCA
TAAATTACCTTGTGTGGTGCTTTCTAGAATTCCTGCAGCCTGCTGAAGGTATTGAAGAAG
TCCCGGATATAGGGCCACTACACATTCATTCGGATTCAGTAGATGACCAGTGCGAAGCTC
AAGGAAATTGAACTGTTTTGCAACCATTGTGGCATGGATCATATAAGAAGTCGTGATATC
TATTTTGAGCTGGCTCCCACTATGGAATTTCTTTCGGTGTTTCCTGGTCCTGCAGTGACT
GCTTTGAGAACAGGTCTTTGGCGAACGAGATAACTATCAAACACATTAAGCATCGCTAGA
ATGATGGCCAGTCAGCTACGCCACGTGGCGCATGTTGTTTGGCCGCAGTGAGAAAGTTTT
TGATTTTTTTTAGAGTTCTTTTCAACATGAAAGTGAGACTTCTTTTTCTTTTTAAGAAAA
GTTTTTTTAGGTTTATTTTTTATTTTTGGGATGGATGTGATGTTCACATGACGTACATAT
ATATTTTTAATTTCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17953 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g16960.1	472	2e-78	protein\|glycosyl transferase, group 1 domain containing protein, expressed
Brachypodium v1_2	Bradi1g32610.1	449	3e-87
Arabidopsis v10	AT3G45100.1	447	6e-58	\| Symbols: SETH2 \| UDP-Glycosyltransferase superfamily protein \| chr3:16504648-16506858 FORWARD LENGTH=447