barSeed - Barley Seed Development Database

Probe CUST_29177_PI390587928

Source Contig U35_17954

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29177_PI390587928	Hv_44K_v2	ACACAAAAGGAAGTCACTGGCGTTGTGTTTCCGTAATGCTGTAGATACCTCACATGTGGA	460	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72888.6	1087	2e-24	370 - 429	100	60 / 60	minus	ABC08470 ABC08472 ABC37012
MLOC	MLOC_72888.8	957	2e-24	363 - 422	100	60 / 60	minus	ABC08470 ABC08472 ABC37012
MLOC	MLOC_72888.2	1109	2e-24	460 - 519	100	60 / 60	minus	ABC08470 ABC08472 ABC37012
MLOC	MLOC_72888.4	1151	2e-24	392 - 451	100	60 / 60	minus	ABC08470 ABC08472 ABC37012
JLOC1	JLOC1_48505.2	1287	8e-25	529 - 588	100	60 / 60	plus
Harvest21	ABC08472	1034	3e-25	515 - 574	100	60 / 60	minus	ABC08472
Harvest35	U35_17954	1034	3e-25	461 - 520	100	60 / 60	plus

Contig Sequence (1034 bp)

>U35_17954 1034 Hv_44K_v2
GTAGAGTCGGAGGGGTTCCAGAGGTTCTACCAGATGACATGATAGTACTTGCAGAACCAG
ATCCAGAAGATATGGTACGGGCTGTCAGGCAAGCTATCGACATACTGCCTGGTATAGATC
CCCAAATTATGCATCGCCGGATGAAAAAACTCTATAGTTGGGATGATGTTGCGAAAAGAA
CGGAGATCGTCTACGATCGTGCAATGCAGTCATCAAACACTAATTTGCTAGATCATCTTC
CCCGGTGAGTATCGGCAGAACACGGACTGTAAATTCATCTTTTGTCACTCATTGCAGAGT
AGTTGTAACTGAAGATAGCAGATTTTTCCTTTGGATTGCCACCTGTCCTTACATATATTG
TCTGTCAAAGGGCTAACTCTGTATATATTTTCTATATTCTATATAATGATTAATTCTACT
TTTCAAAGTGTGGGCAATACCACCACGGTTTTGCATGCAAACACAAAAGGAAGTCACTGG
CGTTGTGTTTCCGTAATGCTGTAGATACCTCACATGTGGAGCTTGGGCAGGCAAGCTGTT
TTGCCTCGTTATGATCATAAATTACCTTGCGTGGTGCCTTCTAGAATTCCTGCAGGTATT
TTTTTTTACCCAGGCCGTCCTCATTTTCTGGAGATTGATGAAATTATAATAGGGTTCCTC
TCCTTCTCAGCCTGCTGAAGGTATTGAAGAAGTCCCGGATATAGGGTCACTACACATTCA
TTCGGATTCAGTAGATGACCAGTGGAAGCGCAAGGAAATTGAACTGTTTTGCAACCATTG
TGGCATGGATCATGTAGGAGGTCGTGATGCCTAGTTTGGGCTAGCTGGCTCCCACTCTGG
AATTTCTTTCGGTGTTTCCTGGTCCTGCAGTGACTGCTTTGAGAACAGATCTTTGGCGAA
CCAGATAATTATGAAATCATTTCCTCGCACCAAATACTGGAATTTACAGTCGTGTTGCAT
AAAGCTAATGGTGTGAGTTGTAATGCCATTGCCAACTTTCTGAGGTGTCTTTTATGCCAA
TCCTCGGACACCAG

Homology of Contig U35_17954 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None