- Probe CUST_29137_PI390587928
- Source Contig U35_15819
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29137_PI390587928 | Hv_44K_v2 | CAAGGTGAAAACGGGTGTCATGTAAAAGTATGATATCCGTTGAGTTGTACAAAATAATAC | 666 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.909 | 0.347 | 0.672 | 1.807 | 1.400 | 1.555 |
| Raw | 18.421 | 9.557 | 19.462 | 80.521 | 22.549 | 26.841 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK367512 | 2547 | 2e-24 | 2457 - 2516 | 100 | 60 / 60 | plus | ABC04470 |
| MLOC | MLOC_57850.4 | 2087 | 2e-24 | 1996 - 2055 | 100 | 60 / 60 | plus | ABC04470 |
| MLOC | MLOC_57850.1 | 2151 | 2e-24 | 2039 - 2098 | 100 | 60 / 60 | plus | ABC04470 |
| JLOC1 | JLOC1_37568.2 | 4398 | 8e-25 | 4102 - 4161 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37568.1 | 2335 | 8e-25 | 2039 - 2098 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04473 | 750 | 3e-25 | 25 - 84 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC04472 | 660 | 3e-25 | 553 - 612 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04471 | 664 | 3e-25 | 38 - 97 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC04470 | 2254 | 3e-25 | 2153 - 2212 | 100 | 60 / 60 | plus | ABC04470 |
| Harvest35 | U35_33970 | 775 | 3e-25 | 18 - 77 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_15819 | 774 | 3e-25 | 667 - 726 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15818 | 2254 | 3e-25 | 2154 - 2213 | 100 | 60 / 60 | plus |
Contig Sequence (774 bp)
>U35_15819 774 Hv_44K_v2 CAGAACGACAAGTACAAGGTGCTCATGTGCACCGACCCTCTCGAAGTCGAGCACCAGAGA CGGCGTGTACAAGCCGCCGTACGGGGCCTTCGTGGACATGGACATCGAGGCGCAAGGGGG CAGCATCTCGCTCAGAACACTGGTCGACCACTCGGTGGTGGAGAGCTTCGGCGGCGGCGG CAGGACGTGCATCACGGCGAGGGTGTACCCGGACCACGTCGTGAACGGCAACAGCCACCT GTACGTGTTCAACAACGGCACCGGCGCCGTCAAGGTGTCCAGCCTCGACGCGTGGGAGAT GGCGACGGCGACCGTGAACGTGCTCCCCGACGGGCTGATCGCGGCGAGCTCGGTGAGCGG AGCTCAAGCCTATTAGGATTCGGGAGCTGGGTTTTCGCTCGGTGGATGGATGGCCATTGT GAATTTCTACGGCCGATTGGATTTGCCTGCCCAATTGTGGCTCAGGTGTACAAATGGAGG CTCCCTCATTGTTTGCCAGAACAGCACAGAAGGAGGATTCTAGGATGCTGCAAAGGAAAA AGATTGTAGGAATATTTGTGTTTAGGTGTTGGAAGGTTTTGATACTGTCAATAATATAGT ACCGGGGTAAAGTATAGCACGCATGCCCTGCATGATGGGCGTTGGCATCAGTTTAGAGTG TATTTCCAAGGTGAAAACGGGTGTCATGTAAAAGTATGATATCCGTTGAGTTGTACAAAA TAATACTATTCAAATCTATAAGGTATATATTGTGATTAAAAAAAAAAAAAAAAA
Homology of Contig U35_15819 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |