barSeed - Barley Seed Development Database

Probe CUST_29061_PI390587928

Source Contig U35_17971

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29061_PI390587928	Hv_44K_v2	GTTATTCAGTCGCTTATGCTTGTAATAGCAGTAATGAAAACAATGGCGAAGGGCAACAAA	919	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355599	998	2e-24	909 - 968	100	60 / 60	plus	ABC09298
MLOC	AK364982	1108	7e-23	1052 - 1108	100	57 / 57	plus	ABC09298
MLOC	MLOC_6342.1	2736	7e-23	1330 - 1389	98	59 / 60	plus	ABC09298
MLOC	MLOC_6341.2	4448	7e-23	1185 - 1244	98	59 / 60	plus	ABC09298
MLOC	MLOC_6341.1	4344	7e-23	1081 - 1140	98	59 / 60	plus	ABC09298
JLOC1	JLOC1_4127.2	1864	4e-23	1124 - 1183	98	59 / 60	plus
JLOC1	JLOC1_4128.1	2579	4e-23	1216 - 1275	98	59 / 60	minus
JLOC1	JLOC1_4127.1	1751	4e-23	1011 - 1070	98	59 / 60	plus
Harvest21	ABC09298	990	3e-25	920 - 979	100	60 / 60	plus	ABC09298
Harvest35	U35_17971	990	3e-25	920 - 979	100	60 / 60	plus

Contig Sequence (990 bp)

>U35_17971 990 Hv_44K_v2
CCGCATGTTCCCCCCTCACGTCATCGCCCTCGACCGCGCGTCGCCATCGTCGTCCCTCTC
CCTCGAGCTCTCGGCGACTCCTCGGAGCCGATGAGAGGCGCCGGGCTCGCGGCGGGCCGT
GACGATTCCGGTGCTGGAGCAAGAATTCGCGGGGAGAACTCCGGCCCCGGGGGCTGCTCT
CACATGGACGGGCTGCCCGGGGAGCTCTGCTTCAAGATCTTCCACCTCCTCGATCACCAG
GCCCTCGCCGCCGCTCCCCAAGTCTGCAGGAAGTGGAGCGCGTTGTCCTGCGACGACGAG
CTGTGGCGCAAGCTGTTCGAGGACAGGTGGGGAGCCGACGCCACGGCCTTCTACGCGCCG
GAGCCGGAGGGCTCCAAGCCCTGGAAGGACGTCTTCGTCGTGCAGGACCGATGCGACCGA
TACGGCCTGGGCGTCAGGATCATCAGGGAAGGAAACGACTACTACCTCATCTACCAAGGC
GAGATCCAGAGCTACCTGGGCACCAGCTGCGACGCCAAGGACGCGCAGCCGCAGGGCGCT
CAAGCCGACAAGAGGCAGATATCTGACCGGATCCTCTTCTTCCTGGGAGACCTGGAGACT
GCTTATGCGGACGCCAAGCGTGTCGAGGCGTGACCTCGTCCTTCAGAACCAAAGCTGTTG
GAAAATGTCTGTAAAATCCTTGTCCCTGTTTTGCATAGCTCGTGCATAAGGTTGTATCTA
GTCTACGTACAGACAAGCCATAGTGTTTCACCGTCGTATTCTTCGTCTGGACGTTACACC
CATAGTGTTTCACCGTCGTATTCTTCGTCTGGACGTTAGTGTTTCACCGTCGTATTCTTC
GTCTGGACGTTACACTTCAGATGTTCACCTTTTACTAATCTTCTTGCAGTTCCCAAACTG
CAGATAATGGACGATACGAGTTATTCAGTCGCTTATGCTTGTAATAGCAGTAATGAAAAC
AATGGCGAAGGGCAACAAAAAAAAAAAAAA

Homology of Contig U35_17971 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46140.2	155	5e-80	protein\|OsFBX59 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi3g52000.1	236	2e-90
Arabidopsis v10	None