barSeed - Barley Seed Development Database

Probe CUST_29060_PI390587928

Source Contig U35_17972

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29060_PI390587928	Hv_44K_v2	ATTCACAACCTGTGGCGGCCTGAACTGAATTGTTAGTGAAATGCATAGTCTGCAGGAAGT	364	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364982	1108	2e-24	381 - 440	100	60 / 60	plus	ABC09298
MLOC	MLOC_6342.1	2736	7e-23	618 - 677	98	59 / 60	plus	ABC09298
MLOC	MLOC_6341.2	4448	7e-23	556 - 615	98	59 / 60	plus	ABC09298
JLOC1	JLOC1_4127.2	1864	4e-23	495 - 554	98	59 / 60	plus
JLOC1	JLOC1_4128.1	2579	4e-23	1928 - 1987	98	59 / 60	minus
Harvest21	ABC09299	565	3e-25	365 - 424	100	60 / 60	plus
Harvest35	U35_17972	566	3e-25	365 - 424	100	60 / 60	plus

Contig Sequence (566 bp)

>U35_17972 566 Hv_44K_v2
CTTTGCTTCCCCTCGCCGCATGTTCCCCCCTCACGTCATCGCCCTCGACCGCGCGTCGCC
ATCGTCGTCCCTCTCCCTCGAGCTCTCGGCGACTCCTCGGAGCCGATGAGAGGCGCCGGG
CTCGCGGCGGGCCGTGACGATTCCGGTGCTGGAGCAAGAATTCGCGGGGAGAACTCCGGC
CCCGGGGGCTGCTCTCACATGGACGGGCTGCCCGGGGAGCTCTGCTTCAAGATCTTCCAC
CTCCTCGATCACCAGGCCCTCGCCGCCGCTCCCCAAGCTGCTCTACTTCTTATGTCGACG
ACATCCTATCATCGGCTGCTCTACCCAGGGCCAGGGGCATTTCCTCTTCTTCTGTACAAG
CATAATTCACAACCTGTGGCGGCCTGAACTGAATTGTTAGTGAAATGCATAGTCTGCAGG
AAGTGGAGCGCGTTGTCCTGCGACGACGAGCTGTGGCGCAAGCTGTTCGAGGACAGGTGG
GGAGCCGACGCCACGGCCTTCTACGCGCCGGAGCCGGGAGGCTCCAAGCCCTGGAAGGAC
GTCTTCGTCGTGCAGGACCGATGCGA

Homology of Contig U35_17972 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None