barSeed - Barley Seed Development Database

Probe CUST_29045_PI390587928

Source Contig U35_29957

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29045_PI390587928	Hv_44K_v2	CATGACATATTGTTTCTGCTGAAATGTCCAGTGACCATAGTAATGCCGTTATGCTGTCAG	54	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68654.1	2194	2e-24	2064 - 2123	100	60 / 60	plus	ABC06948 ABC06949 ABC06950 ABC40620
JLOC1	JLOC1_45436.1	2326	8e-25	2064 - 2123	100	60 / 60	plus
Harvest21	ABC29562	142	3e-25	55 - 114	100	60 / 60	plus	ABC29562
Harvest21	ABC06948	1065	3e-25	942 - 1001	100	60 / 60	plus	ABC06948
Harvest35	U35_29957	142	3e-25	55 - 114	100	60 / 60	plus
Harvest35	U35_2614	1209	3e-25	1075 - 1134	100	60 / 60	plus

Contig Sequence (142 bp)

>U35_29957 142 Hv_44K_v2
GCTGAAATGTCATGGGAGTATGTGATCAAATGCCAGGAATATATCACATACTCCCATGAC
ATATTGTTTCTGCTGAAATGTCCAGTGACCATAGTAATGCCGTTATGCTGTCAGTTTTTA
AAAAAAAAAAAAAAAGGGCGGC

Homology of Contig U35_29957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None