barSeed - Barley Seed Development Database

Probe CUST_29008_PI390587928

Source Contig U35_17998

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29008_PI390587928	Hv_44K_v2	CCAAAAGAAATTGGTCAATGGCCCGGTTCTCTTCTATACATTTTTATTATTAGTGCAGTA	985	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.754	1.705	1.001	0.904	0.512	0.489
Raw	2685.903	3973.533	2106.027	2945.503	592.236	623.074

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372094	1360	2e-24	1031 - 1090	100	60 / 60	plus	ABC08321 ABC08322
MLOC	MLOC_17492.1	1239	2e-24	55 - 114	100	60 / 60	minus	ABC08321 ABC08322
JLOC1	JLOC1_12074.1	864	8e-25	574 - 633	100	60 / 60	plus
Harvest21	ABC08321	1092	3e-25	986 - 1045	100	60 / 60	plus	ABC08321
Harvest35	U35_17998	1092	3e-25	986 - 1045	100	60 / 60	plus

Contig Sequence (1092 bp)

>U35_17998 1092 Hv_44K_v2
GGCCTGTTCTTCTTCCCCTCTTCCCCTCCTCCAAGCAAACGCGAAGGATCAATGGCCGCT
CGGATCACGAGGCTGCTCCACCACCACAACCGCCGCCTACTCGCCACCGCGGCGGAGGCC
TCCGCTCGTCGCCTGCCGCGCGCTCCCCTTGGCGGCGCCATCTACAAGCAGGATGTTGCA
AAGGCTGAAGCATCCTCTTTAAAAAATTCAAGGTGGTACATGACCAAGTCAAGCCCTTCT
AGTCCTCTCACAATGCAGGAGTACCGCAAAACATTTCCTTCGTTAATAAGGTCATCTGCA
TCTTACTCCTCACAAGCTTCAGACAAAAATCCCAAGGAGAAAAAAGACTTGTCAACTGTT
GAAGATCCCTTCAGTGCCCCTACATATAATATACCTGAGAAGCCGGTGACTTTTGCTGAG
GGAGCTTCTTACAGTGTTGTAATACTCGCGGGGCTTGGAGTTGCAGCATTAGCTGGATAT
GCTGTTTTCAAGGAGCTTATCTTTGAACCAAAAGAGTACAAGATCTTTGGGAAAGCTCTA
GCAAGAGTTCAGAGTGATAGTCAGGTGACAGGGAGAATTGGGTACCCTATTACTGGTTAT
GGTAATGAAAGCAGAAACCGTGCAGCTCGGCAGCGTATTCCAAACAGGGTTTGGACAGAT
GAGGATGGTGTTGAACATGTGGAGGTCAACTTTTACATCCGAGGTCCGCATGGAGCTGGA
AAGGTATATTCAGAGATGTTCAAAGATAACTCTGACAGGACATGGAAGTTCATGTACCTT
CTTGTTGAGTTCACAGCGCCGCAACAGGGACAAGTAATGTTAGAATCTTACATACCAGCG
TAAGGATGCGTGAGACCATAGTTGCTAGGAACCTTGGTAATATGGGTTGAGGAACAGGGT
TGGGTCGCCGCCACCTCTTACGGTAGAGGTGTGGCGAACCTCTTTTGGGTTAGGTGCAAC
AAAGAGTACACATTTTTCGGACCCCCCAAAAGAAATTGGTCAATGGCCCGGTTCTCTTCT
ATACATTTTTATTATTAGTGCAGTATAAATTTTTAGAACAATGATTTGGCTTTGCTGAAA
GNCCCAGCATGC

Homology of Contig U35_17998 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g14890.1	266	1e-120	protein\|AGAP008572-PA, putative, expressed
Brachypodium v1_2	Bradi2g41600.1	345	1e-108
Arabidopsis v10	AT4G00026.1	269	7e-74	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr4:11634-13285 REVERSE LENGTH=269