barSeed - Barley Seed Development Database

Probe CUST_29006_PI390587928

Source Contig U35_17999

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29006_PI390587928	Hv_44K_v2	GATGCCTATGGATTTCGTGCAAACCTTCATTTTTGATATCCAAATAGCAATAATATCTGG	1267	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.514	1.765	1.055	0.855	0.441	0.488
Raw	807.408	1491.034	772.974	1005.360	178.798	213.516

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372047	1365	2e-24	1293 - 1352	100	60 / 60	plus	ABC08321 ABC08322
JLOC1	JLOC1_39141.1	1042	3e-24	984 - 1042	100	59 / 59	plus
Harvest21	ABC08322	1352	3e-25	1268 - 1327	100	60 / 60	plus	ABC08322
Harvest35	U35_17999	1352	3e-25	1268 - 1327	100	60 / 60	plus

Contig Sequence (1352 bp)

>U35_17999 1352 Hv_44K_v2
AAAGTCGTCTAAACCCCCTGGAAGGAGGGGGAAATCCCTAATAACCCCCGCTCGCCTTTC
CACGGCGAAAGGCATCCCGGCGGCGATGGCGGCGGCCGCGGCAAGGTCCGGATCCCGGCG
CTTGTTCTCCATATCCGCCCTGGTGCCTCCGAAGCCGCCAACCCCTCCCCCGAAGGCAGA
CCCCTTCGCCAGCCTCTTCATCCCCGGGTTAAGCAAGCGAACAACAACTGATGGACTTAG
GGAAGCTTTTGCAAAGTCTGGTGAAGTTGTGCATGCATCATCTGTAAAAAGTTCAAGGTG
GTATATGATCAGTGCAAACCGTTCAGGTCCTTTGACAGTGCGTAAAGAATACCGCAAAGT
GCTTCCTTCTTTCATAAGGCCATCTGCATCTTACTCCACAAAAGCCTCAGAAAAAAGACC
AAAACAGGAGAGAACAGACTTGACGACTGTTGAAGATCCCTTTAATGCCCCTACCTACAA
TATACCTGAGAAGCCAGTGACATTTGTCGAGGGGGCCTCTTACAGTGTTGTAATACTTGC
TGGGCTTGGAGTTGCTGCATTGGCTGGATATGCTGTTCTCAAAGAGCTTATATTTGAACC
AAAAGAGTACAAGATTTTTGGGAAAGCTCTAGCAAGAGTTCAGAGTGATAGTCAGGTTAC
AGCCAAAATTGGTTACCCTATAACTGGTTATGGTACGGAATCCAGAAACCGTGCAGCTCG
GCAGCGCATCCAAAACAGGGTTTGGACAGATGAGGATGGTGTTGAACATGTGGAGGTTGC
CTTTCATATCCGGGGGCCACATGGAGCTGGAAAGGTGTTTGCAGAGATGTTCAAAGATAA
CGCCGACAGGACATGGAAGTTCACGTTTCTTCTCGTCGAGATTACGTCACCGCGACCCGC
ACAAATCATGTTAGAATCTTACCTACCAGCATAAGGATGCAAGAGACAACATCAGCTAGC
AGTGGCACATCCATTCGGCAACTTCTTTTTACGTCATATATCTCCAATGGCTGCATCTCA
TGTTAAATACCCGTCCTCGGGTTAAAGAAGTTGTGAATTTTGAACTTCCCCGAAAGCATA
AGTAGGAGGAAGATGAACCATCAGAGCTGCTGACCATGTCTAGCATCTTAGATATGCTGT
TGCTTTGTTTAGCTGAAAGGCGTGCAGGCACATGTATACAACCCATCTTTCCCTCAAACA
TGGGACGGAGGAGGGAGTGATCCTTCATCTATCGAGTTTTAGTCCCATTTCAGGCAGTTT
TTTTAATGATGCCTATGGATTTCGTGCAAACCTTCATTTTTGATATCCAAATAGCAATAA
TATCTGGTTACACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17999 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g14890.1	266	5e-96	protein\|AGAP008572-PA, putative, expressed
Brachypodium v1_2	Bradi2g41600.1	345	3e-91
Arabidopsis v10	AT4G00026.1	269	6e-63	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr4:11634-13285 REVERSE LENGTH=269