barSeed - Barley Seed Development Database

Probe CUST_28990_PI390587928

Source Contig U35_14012

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28990_PI390587928	Hv_44K_v2	CTTAGTGTACAACTGTACTTTGGGATTCCCCTCAACTTCTGTAATAAACAAAGTACTAAT	1043	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.275	1.495	1.160	0.863	0.334	0.299
Raw	853.532	888.408	591.854	693.983	96.815	93.066

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361195	1082	2e-24	1007 - 1066	100	60 / 60	plus	ABC01139 ABC01170 ABC01175 ABC31708 ABC36971 ABC48480
JLOC1	JLOC1_39050.1	1111	4e-23	1016 - 1075	98	59 / 60	plus
Harvest35	U35_14012	1120	3e-25	1044 - 1103	100	60 / 60	plus

Contig Sequence (1120 bp)

>U35_14012 1120 Hv_44K_v2
GAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTATTCCGCCTCCACCCCCCGAACTC
CAAACCCTAGTAGCTGCGCCGCCGCCGCCAGGTAAGAGGCGAGATGGTGTCCGGCTCCGG
CGTGTGCGCCAAGCGCGTGGTGGTGGACGCCCGCCACCACATGCTCGGCCGCCTGGCGTC
GATCGTCGCCAAGGAGCTGCTCAACGGGCAGCGCGTGGTGGTGGTCCGCTGCGAGGAGAT
CTGCATGTCCGGCGGCCTCGTCCGCCAGAAGATGAAGTACCTCCGCTTCCTCCGCAAGAG
GATGAACACCAAGCCATCCCACGGCCCCATCCACTTCCGCGCCCCGGCCAAGATCCTCTG
GCGCACCATCCGCGGTATGATTCCGCACAAGACCGCGAGGGGCGAGGCCGCGCTTGCCAG
GCTCAAGGCGTACGAGGGTGTGCCGCCGCCGTACGACAGGACCAAGCGCATGGTCATCCC
CGACGCGCTCAAGGTTCTGAGGCTGCAGCCTGGGCACAGGTACTGCCTCCTGGGCCAGCT
CTCCAAGGAGGTCGGATGGAACTACGCCGACACCATCAGGGAGCTGGAGGAAAAGAGGAA
GGAGAAGGCCAAGGTCTCGTATGACAGGAGAAAGCAGCTGGCGAAGCTCCGCGTCAAGGC
CGAGAAGGCAGCCGAGGAGAAGTTGGGAACTCAGCTGGAGATCCTGGCCCCGATCAAATA
CTAAGAGAGATCAGAGCTTTTGTGCGCCTTCAGTTTTGGGATACCTCTGTCCTCCTCTTG
TCTTTAAGTAGTTTGGTAACTCTGTTAGTACAACCTGGTTGGTAAACCTTTGTTATGCAT
GCAGTTCTGCTACCCTCATTTGAAATTTTCTACTTGGTCAACTAAAAAAAAAAAAAAATG
TGTGCATTTGAAGATTCTTGTGAATGTCTATCAGGTGATTATAAAAAAAAAAAAAAAAAC
GTTTCTCTTCACTACAGCCTTGGCAGCCCCTTGTTATGGCCTGTTGTGGGTGTTTTAGCG
ATTTCCTGAGCTACATTAAAAATCTTAGTGTACAACTGTACTTTGGGATTCCCCTCAACT
TCTGTAATAAACAAAGTACTAATANAAAGTGTTATAATCA

Homology of Contig U35_14012 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g54890.1	207	1e-128	protein\|ribosomal protein L13, putative, expressed
Brachypodium v1_2	Bradi1g08260.1	207	4e-130
Arabidopsis v10	AT5G48760.1	206	7e-116	Ribosomal protein L13 family protein \| chr5:19771315-19772686 REVERSE LENGTH=206