barSeed - Barley Seed Development Database

Probe CUST_28989_PI390587928

Source Contig U35_14013

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28989_PI390587928	Hv_44K_v2	AGGCTTTTTGTTTACTGTGATACTCTTTGAAGATAGATTGTAAGTCTGCAGATAGAAACC	645	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74005.2	453	3e-22	97 - 155	98	58 / 59	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01136 ABC01137 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC28961 ABC30555 ABC31601 ABC31617 ABC37479 ABC49951
JLOC1	JLOC1_49299.1	794	1e-22	438 - 496	98	58 / 59	minus
Harvest21	ABC49951	687	1e-24	122 - 180	100	59 / 59	minus	ABC49951
Harvest35	U35_14013	754	3e-25	646 - 705	100	60 / 60	plus
Harvest35	U35_48315	687	1e-24	122 - 180	100	59 / 59	minus

Contig Sequence (754 bp)

>U35_14013 754 Hv_44K_v2
ACCGCAGCATCTGCATCTCCCCTCAGCTTCGCTTCCAAACCCGACCTCCAATCAGCAACA
GCAGCAGCTTCCATGGCGCCCAAGGCTGCTGAGAAGAAGCCGGTGGAGAAGACCCCGGCG
GGCAAGAAGCCCAAGGCGGAGAAGAAGGTGCCGGCGTCCAAGGAGGCCGGAGGCGAGAAG
AAGGGCAAGAAGAAGTCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTG
CTCAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCC
TTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGCCAGGTACAAC
AAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGC
GAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAAGCTGTCACCAAGTTCACCTCGTCC
TAGGCGTCTTCCTTGCATCGCATGGACGAATTGATGGTGGCATTCTGTATGTAGTTAGCG
GTACGATGTTACACCCTCTGTAAGGATTGTGCCGCTTGCGGGTCTGAAGGAATGGTGATG
TTGCCGTCTGAATGAATGTTCATCTCTTAAAAAAAAAAAAAAAAAAGGCTTTTTGTTTAC
TGTGATACTCTTTGAAGATAGATTGTAAGTCTGCAGATAGAAACCTCTAGTTTAAATTCT
ACACTGTTTGAAGTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14013 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62230.1	140	3e-57	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g54540.1	141	3e-59
Arabidopsis v10	AT5G22880.1	145	2e-55	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145