barSeed - Barley Seed Development Database

Probe CUST_28930_PI390587928

Source Contig U35_44302

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28930_PI390587928	Hv_44K_v2	TCCGAGTCTGACATAAGGTGCGTCTATGCTTTGCAATTTCTTTTCCTCCCTTTTCTCAGT	271	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62518.5	3678	7e-23	391 - 450	98	59 / 60	plus	ABC04119 ABC21725
Harvest21	ABC41921	386	3e-25	272 - 331	100	60 / 60	plus
Harvest35	U35_44302	386	3e-25	272 - 331	100	60 / 60	plus

Contig Sequence (386 bp)

>U35_44302 386 Hv_44K_v2
CAAGGATGGACAGACTGAGAGCTCTTTCTTGATTCTATGGCTCGTTGATGATAATCCTCC
ACCACTCCCAGTAAACAGCGGTATTAAAACTTATGCAGATCTCATTCTGAAGCCTTCTGA
AGAAGATCTCAAGATCTGGCCTCACAGATTTGAATTCCGATTAAGAGTCGCTCTTGGACC
CAAAGGAGAATTGTTTCTCACTTCTCGAATTAGAAACACCAACACTGATGGAAAACCCTT
CTCATTTACATTTGCATATCATACATACTTCTCCGAGTCTGACATAAGGTGCGTCTATGC
TTTGCAATTTCTTTTCCTCCCTTTTCTCAGTTTTTTTTCCTGCCTGGATATTTCAAGCTC
AAACTTCTCCAAGGGTTTAGAATTGC

Homology of Contig U35_44302 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None