barSeed - Barley Seed Development Database

Probe CUST_28921_PI390587928

Source Contig U35_20355

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28921_PI390587928	Hv_44K_v2	CAGAGAAAGAGAACTGAACTACAGATGTACCTGATCAATATGCGGAGAGTGATGAGTGTG	1443	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.318	2.002	1.220	0.747	0.361	0.416
Raw	1797.973	2446.706	1289.468	1238.344	211.619	263.813

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355680	3437	2e-24	3358 - 3417	100	60 / 60	plus	ABC15701 ABC18282
MLOC	MLOC_19654.3	1948	2e-24	41 - 100	100	60 / 60	minus	ABC18282
MLOC	MLOC_19654.2	3951	2e-24	2119 - 2178	100	60 / 60	minus	ABC10932 ABC18282
MLOC	MLOC_19654.1	2588	2e-24	923 - 982	100	60 / 60	minus	ABC10932 ABC18282
MLOC	MLOC_19653.2	1657	2e-24	1053 - 1112	100	60 / 60	minus	ABC10932 ABC18282
JLOC1	JLOC1_13618.1	2611	8e-25	1774 - 1833	100	60 / 60	plus
JLOC1	JLOC1_13617.3	2101	8e-25	1546 - 1605	100	60 / 60	minus
JLOC1	JLOC1_13617.2	1634	8e-25	1079 - 1138	100	60 / 60	minus
JLOC1	JLOC1_13617.1	1486	8e-25	931 - 990	100	60 / 60	minus
Harvest21	ABC18282	653	3e-25	34 - 93	100	60 / 60	minus	ABC18282
Harvest35	U35_20355	1535	3e-25	1444 - 1503	100	60 / 60	plus

Contig Sequence (1535 bp)

>U35_20355 1535 Hv_44K_v2
GGGGTGGCAGGAGGTTAGATCTGGGAGGGATGGGGAACAGAATAGGAGGGAGGAGGAAGG
CCGGGGTGGAGGAGCGGTACACGAGGCCGCAGGGGCTGTACGAGCACAGGGATATCGACC
AGAAGAAGCTACGCAAGCTGATCCTCGAGGCCAAGCTCGCGCCCTGCTACCCGGGGGCTG
ACGACGCCGCGGGGGCTGACCTGGAGGAGTGTCCCATCTGCTTCCTGTACTACCCAAGCC
TTAACCGATCAAAATGTTGCTCGAAAGGGATATGTACAGAGTGCTTTCTTCAAATGAAGC
CAACTCATACTGCTCGGCCTACACAGTGCCCATTCTGCAAAACCCCCAACTATGCCGTGG
AGTATCGCGGTGTAAAGACAAAGGAGGAAAGGAGCATAGAGCAATTTGAAGAACAAAAAG
TCATTGAAGCACAGATGAGGATGCGCCAGCAAGCACTTCAAGACGAAGAGGATAAGATGA
GAAGAAAACAGAGTAGGTGCTCTTCTAGCAGAACAATCGCTCCAACAACAGAAGTCGAAT
ATCGAGATATTTGCAGCACATCCAATTCAGCGCCACCGTACCGATGTACTGAGCAAGAAA
CTGAATGTTGTTCGTCTGAGCCTTATGTTCTGCTCAGGCTAACATGCGGTCTTTCCATTC
TAGGCATACTCGGGGACCAAGTCATGTCTTTCTTCTTGACCAACAAAGCAGGGGAGGAAT
AAGGACTGTTGCTGTCTCTAATCACTTGGTTTTTGATCATGTCCTTAACAATGCCTTCCA
TGATATCCTTTTGGTGGTGAGGAAGTCTGTAAGTGATGGTAACATAGACATGAATATAGA
GGACATGATGGTTATGGAAGCGATTTGGCGTTCAATTCAGGAGCAAGGAAGTATAGGAAA
CCCTGCTTGTGGGAGCTTTATGCCTTTTGAGCAACCAACACGTGAGCGGCCGCTAGGCCA
TGTACTCGTGGGCCAGAGGATCCAAGTTCCACCAGATCATGGAGATGACACAGGTGTTTG
AAGGCAGCCTGATCAGGGCCATCAGGCGGCTGGAGGAGGTCCTACAGCAGCTGATTCTGG
CGTCCCAGTCGATCGGTGAGACCCAGCTTGAGGCCAAGCTCGAGGAGGCGGTCAGCAAGA
TTAAGAGGGACATTGTGTTCGCCGCGTCCCTGTACTTGTGACATCTTCTGCGTGGTTTGG
TTCCATCACAGGAGCTCATGTACAAGGGGATACAGAGCTTATCATTGTCTGCTGTTGTCC
TGCGTCGTCGACATGGATATGGTTGAGCCGGCTTGACTGGTTTGCTGCAACACTGAGCGG
CTTATGTTGTCGCCATGGCGGGGATAAAATTTTGTAGGTTGTAGAAGCAGTAAGTCTTGA
TTGAATTGATTAGGGTTTTGGTCCAAGGACTCAACCTGTACCATTTTTCTTCTTCCCTGT
ACACAGAGAAAGAGAACTGAACTACAGATGTACCTGATCAATATGCGGAGAGTGATGAGT
GTGATATTTTTATTTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20355 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g14720.2	424	9e-111	protein\|expressed protein
Brachypodium v1_2	Bradi3g09270.1	424	3e-116
Arabidopsis v10	AT1G78420.1	401	5e-74	RING/U-box superfamily protein \| chr1:29505278-29507272 FORWARD LENGTH=401